Structure of PDB 8hqt Chain A Binding Site BS01

Receptor Information
>8hqt Chain A (length=295) Species: 307796 (Saccharomyces cerevisiae YJM789) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSI
QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIR
SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK
DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYM
ITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT
LKIWNSSTYKVEKTLNVGLERSWCIATHNYIASGFDNGFTVLSLG
Ligand information
>8hqt Chain B (length=6) Species: 2697049 (Severe acute respiratory syndrome coronavirus 2) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
VKLHYT
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8hqt Tighter ER retention of SARS-CoV-2 Omicron spike caused by a constellation of folding disruptive mutations
Resolution1.8 Å
Binding residue
(original residue number in PDB)		R15 K17 Y33 R59 D98 Y99 R101 D117 F142 M144 N188 D206 W274
Binding residue
(residue number reindexed from 1)		R14 K16 Y32 R58 D97 Y98 R100 D116 F141 M143 N187 D205 W273
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:8hqt, PDBe:8hqt, PDBj:8hqt
PDBsum8hqt
PubMed
UniProtP41811|COPB2_YEAST Coatomer subunit beta' (Gene Name=SEC27)

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