Structure of PDB 8ho6 Chain A Binding Site BS01

Receptor Information
>8ho6 Chain A (length=281) Species: 128810 (Saccharum hybrid cultivar) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NLHVFTIAELRAVTRDFSMTNFIGEGGFGPVYKGYVHDLAAQTVAVKLLD
LEGGQGHTEWQTEVFFLGQLRHPHLVKLIGYCYEDEHRLLVYEFMTRGSL
EKHLFSLPWSTRLKIAIGAAKGLAFLHEAKPVIYRDFKTSNILLDSDYKA
KLSDFGLAKDGPDETHVSTRVMGTQGYAAPEYIMTGHLTAKSDVYGYGVV
LLELLSGRKAVDKEQSLVEWARPYLTDARRLDRVMDPSLAGQYSTRAAHK
AAAVAHQCVALNPKSRPHMSAVVDALEPLLA
Ligand information
Ligand IDATP
InChIInChI=1S/C10H16N5O13P3/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(26-10)1-25-30(21,22)28-31(23,24)27-29(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H,23,24)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1
InChIKeyZKHQWZAMYRWXGA-KQYNXXCUSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)N
CACTVS 3.341Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O
ACDLabs 10.04O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)O[P@](=O)(O)OP(=O)(O)O)O)O)N
CACTVS 3.341Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@](O)(=O)O[P@@](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O
FormulaC10 H16 N5 O13 P3
NameADENOSINE-5'-TRIPHOSPHATE
ChEMBLCHEMBL14249
DrugBankDB00171
ZINCZINC000004261765
PDB chain8ho6 Chain A Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8ho6 Receptor-like cytoplasmic kinase ScRIPK in sugarcane regulates disease resistance and drought tolerance in Arabidopsis.
Resolution2.1 Å
Binding residue
(original residue number in PDB)		G25 E26 G27 G28 F29 V32 A51 K53 M101 S105 K150 L155 D166
Binding residue
(residue number reindexed from 1)		G24 E25 G26 G27 F28 V31 A45 K47 M95 S99 K138 L143 D154
Annotation score4
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sun Dec 1 09:39:06 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '8ho6', asym_id = 'A', bs = 'BS01', title = 'Receptor-like cytoplasmic kinase ScRIPK in sugar... resistance and drought tolerance in Arabidopsis.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='8ho6', asym_id='A', bs='BS01', title='Receptor-like cytoplasmic kinase ScRIPK in sugar... resistance and drought tolerance in Arabidopsis.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0004672,0005524,0006468', uniprot = '', pdbid = '8ho6', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0004672,0005524,0006468', uniprot='', pdbid='8ho6', asym_id='A')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>