Structure of PDB 8gxd Chain A Binding Site BS01

Receptor Information

>8gxd Chain A (length=366) Species: 262543 (Exiguobacterium sibiricum 255-15) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

RFSIFETMAMEDYEQVVFCHDKVSGLKAIIAIHDTTLGPALGGLRMWNYA
SDEEALIDALRLAKGMTYKNAAAGLNLGGGKAVIIGDAKTQKSEALFRAF
GRYVQSLNGRYITAEDVNTTVADMDYIHMETDFVTGVSPAFGSSGNPSPV
TAYGVYRGMKAAAKEVYGTDSLGGKTVAIQGVGNVAFNLCRHLHEEGAKL
IVTDINQDALRRAEEAFGALVVGPDEIYSVDADIFAPCALGATLNDETIP
QLKVKIIAGAANNQLKEDRHGDMLQERGILYTPDFVINAGGVINVADELD
GYNRERAMKKVELVYDAVAKVIEIAKRDHLPTYRAAEKMAEERIATMGSA
RSQFLRRDKNILGSRG

Ligand information

Ligand ID

InChI

InChI=1S/Ca/q+2

InChIKey

BHPQYMZQTOCNFJ-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Ca++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Ca+2]

Formula

Name

CALCIUM ION

PDB chain

8gxd Chain A Residue 406 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	8gxd Reshaping Substrate-Binding Pocket of Leucine Dehydrogenase for Bidirectionally Accessing Structurally Diverse Substrates
Resolution	3.02 Å
Binding residue (original residue number in PDB)	K77 N270
Binding residue (residue number reindexed from 1)	K69 N262
Annotation score	1

Enzymatic activity

Enzyme Commision number

1.4.1.9: leucine dehydrogenase.

Gene Ontology

	Molecular Function
GO:0000166	nucleotide binding
GO:0016491	oxidoreductase activity
GO:0016639	oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor

	Biological Process
GO:0006520	amino acid metabolic process

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Molecular Function

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Biological Process

External links

PDB	RCSB:8gxd, PDBe:8gxd, PDBj:8gxd
PDBsum	8gxd
PubMed
UniProt	B1YLR3

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