Structure of PDB 8gu1 Chain A Binding Site BS01
Receptor Information
>8gu1 Chain A (length=234) Species:
537021
(Candidatus Liberibacter asiaticus str. psy62) [
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SALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETA
VSGLITGLDTNRYDVLVNVAITPERQKKYDFSIPYIAHRVLLVVRSDQQD
IRSFKDLTDKTVAQILGTDLSRFAKELKSHLVFSHNFEQSLQLLLSKRTD
ATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSI
NEILCAIHLDGTYKKIFDRYFDKNIISSVPGCSS
Ligand information
Ligand ID
1II
InChI
InChI=1S/C28H29F2N3O/c29-22-11-7-20(8-12-22)25(21-9-13-23(30)14-10-21)4-3-17-32-18-15-24(16-19-32)33-27-6-2-1-5-26(27)31-28(33)34/h1-2,5-14,24-25H,3-4,15-19H2,(H,31,34)
InChIKey
YVUQSNJEYSNKRX-UHFFFAOYSA-N
SMILES
Software
SMILES
CACTVS 3.385
Fc1ccc(cc1)C(CCCN2CCC(CC2)N3C(=O)Nc4ccccc34)c5ccc(F)cc5
OpenEye OEToolkits 2.0.7
c1ccc2c(c1)NC(=O)N2C3CCN(CC3)CCCC(c4ccc(cc4)F)c5ccc(cc5)F
Formula
C28 H29 F2 N3 O
Name
3-[1-[4,4-bis(4-fluorophenyl)butyl]piperidin-4-yl]-1~{H}-benzimidazol-2-one
ChEMBL
CHEMBL1423
DrugBank
DB01100
ZINC
ZINC000004175630
PDB chain
8gu1 Chain A Residue 301 [
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Receptor-Ligand Complex Structure
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PDB
8gu1
Identification and evaluation of potential inhibitor molecules against TcyA from Candidatus Liberibacter asiaticus.
Resolution
2.65 Å
Binding residue
(original residue number in PDB)
T14 D15 Y18 S22 V58 L61 V74 N75 A77 R82 T125 L127 F144 P162
Binding residue
(residue number reindexed from 1)
T7 D8 Y11 S15 V51 L54 V67 N68 A70 R75 T118 L120 F137 P155
Annotation score
1
Enzymatic activity
Enzyme Commision number
?
External links
PDB
RCSB:8gu1
,
PDBe:8gu1
,
PDBj:8gu1
PDBsum
8gu1
PubMed
37394197
UniProt
C6XGT2
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