Structure of PDB 8gog Chain A Binding Site BS01

Receptor Information
>8gog Chain A (length=121) Species: 1895 (Streptomyces avidinii) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DQAGITGTWYNQLGSTFIVTAGADGALTGTYESAVGNAESRYVLTGRYDS
APATDGSGTALGWTVAWKNNYRNAHSATTWSGQYVGGAEARINTQWLLTY
GTTEANAWESTLVGHDTFTKV
Ligand information
Ligand IDJSU
InChIInChI=1S/C21H32N3O2S.3ClH.Rh/c1-12-13(2)15(4)16(14(12)3)9-10-22-19(25)8-6-5-7-18-20-17(11-27-18)23-21(26)24-20;;;;/h17-18,20H,5-11H2,1-4H3,(H,22,25)(H2,23,24,26);3*1H;/q-1;;;;+3/p-3/t17-,18-,20-;;;;/m0..../s1
InChIKeyVZIPCMCWYKDVTP-PCIMLXTCSA-K
SMILES
SoftwareSMILES
CACTVS 3.385[Cl-].[Cl-].[Cl-].[Rh+3].CC1=C(C)C(=C(C)[C-]1CCNC(=O)CCCC[C@@H]2SC[C@@H]3NC(=O)N[C@H]23)C
OpenEye OEToolkits 2.0.7CC12=C3([Rh+3]145([C-]2(C4(=C53C)C)CCNC(=O)CCCCC6C7C(CS6)NC(=O)N7)([Cl-])([Cl-])[Cl-])C
CACTVS 3.385[Cl-].[Cl-].[Cl-].[Rh+3].CC1=C(C)C(=C(C)[C-]1CCNC(=O)CCCC[CH]2SC[CH]3NC(=O)N[CH]23)C
OpenEye OEToolkits 2.0.7CC12=C3([Rh+3]145([C-]2(C4(=C53C)C)CCNC(=O)CCCC[C@H]6[C@@H]7[C@H](CS6)NC(=O)N7)([Cl-])([Cl-])[Cl-])C
FormulaC21 H32 Cl3 N3 O2 Rh S
Nametrichloro((3~{a}~{S},4~{S},6~{a}~{R})-4-[(5~{R})-5-oxidanyl-5-[2-(2,3,4,5-tetramethylcyclopenta-2,4-dien-1-ylidene)ethylamino]pentyl]-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-2-one)rhodium(3+)
ChEMBL
DrugBank
ZINC
PDB chain8gog Chain A Residue 302 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8gog Artificial metalloenzyme catalyzed enantiodivergent synthesis of isoindolones
Resolution2.0 Å
Binding residue
(original residue number in PDB)
L25 S27 Y43 S45 V47 G48 N49 W79 S88 W92 W108 D128
Binding residue
(residue number reindexed from 1)
L13 S15 Y31 S33 V35 G36 N37 W67 S76 W80 W96 D116
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology

View graph for
Molecular Function
External links
PDB RCSB:8gog, PDBe:8gog, PDBj:8gog
PDBsum8gog
PubMed
UniProtP22629|SAV_STRAV Streptavidin

[Back to BioLiP]