Structure of PDB 8gli Chain A Binding Site BS01

Receptor Information
>8gli Chain A (length=281) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
FQGPTSFHVIQTSSFTNSTWAQTQGSGWLDDLQIHGWDSDSGTAIFLKPW
SKGNFSDKEVAELEEIFRVYIFGFAREVQDFAGDFQMKYPFEIQGIAGCE
LHSGGAIVSFLRGALGGLDFLSVKNASCVPSPEGGSRAQKFCALIIQYQG
IMETVRILLYETCPRYLLGVLNAGKADLQRQVKPEAWLSSGPSPGPGRLQ
LVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVAD
GEAAGLSCRVKHSSLEGQDIILYWRGSGLND
Ligand information
Ligand IDZR2
InChIInChI=1S/C78H152O9/c1-5-7-9-11-13-15-17-24-32-38-44-50-56-62-70(77(83)86-66-73-74(80)75(81)76(82)78(84)87-73)71(79)63-57-51-45-39-33-27-21-19-20-25-30-36-42-48-54-60-68-65-69(68)61-55-49-43-37-31-26-22-23-28-34-40-46-52-58-64-72(85-4)67(3)59-53-47-41-35-29-18-16-14-12-10-8-6-2/h67-76,78-82,84H,5-66H2,1-4H3/t67-,68-,69+,70-,71-,72-,73+,74-,75-,76+,78-/m1/s1
InChIKeyALFANZHAIQQPQB-RYNSOJLXSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CCCCCCCCCCCCCCC[C@H]([C@@H](CCCCCCCCCCCCCCCCC[C@@H]1C[C@@H]1CCCCCCCCCCCCCCCC[C@H]([C@H](C)CCCCCCCCCCCCCC)OC)O)C(=O)OC[C@H]2[C@H]([C@H]([C@@H]([C@@H](O2)O)O)O)O
OpenEye OEToolkits 2.0.7CCCCCCCCCCCCCCCC(C(CCCCCCCCCCCCCCCCCC1CC1CCCCCCCCCCCCCCCCC(C(C)CCCCCCCCCCCCCC)OC)O)C(=O)OCC2C(C(C(C(O2)O)O)O)O
CACTVS 3.385CCCCCCCCCCCCCCC[C@H]([C@H](O)CCCCCCCCCCCCCCCCC[C@@H]1C[C@@H]1CCCCCCCCCCCCCCCC[C@@H](OC)[C@H](C)CCCCCCCCCCCCCC)C(=O)OC[C@@H]2O[C@@H](O)[C@@H](O)[C@H](O)[C@@H]2O
CACTVS 3.385CCCCCCCCCCCCCCC[CH]([CH](O)CCCCCCCCCCCCCCCCC[CH]1C[CH]1CCCCCCCCCCCCCCCC[CH](OC)[CH](C)CCCCCCCCCCCCCC)C(=O)OC[CH]2O[CH](O)[CH](O)[CH](O)[CH]2O
ACDLabs 12.01OC1C(O)C(COC(=O)C(CCCCCCCCCCCCCCC)C(O)CCCCCCCCCCCCCCCCCC2CC2CCCCCCCCCCCCCCCCC(OC)C(C)CCCCCCCCCCCCCC)OC(O)C1O
FormulaC78 H152 O9
Name6-O-[(2R,3R)-3-hydroxy-20-{(1R,2S)-2-[(17R,18R)-17-methoxy-18-methyldotriacontyl]cyclopropyl}-2-pentadecylicosanoyl]-alpha-L-galactopyranose
ChEMBL
DrugBank
ZINC
PDB chain8gli Chain A Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8gli CD1 lipidomes reveal lipid-binding motifs and size-based antigen-display mechanisms
Resolution2.1 Å
Binding residue
(original residue number in PDB)
F10 V12 Q14 G28 S29 H38 A47 F49 L66 I69 F70 V72 Y73 F77 E80 F84 F88 I96 Q97 G98 A100 F123 L124 F144 L147 I148 I154 T157 L161 L162
Binding residue
(residue number reindexed from 1)
F7 V9 Q11 G25 S26 H35 A44 F46 L63 I66 F67 V69 Y70 F74 E77 F81 F85 I93 Q94 G95 A97 F120 L121 F141 L144 I145 I151 T154 L158 L159
Annotation score1
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:8gli, PDBe:8gli, PDBj:8gli
PDBsum8gli
PubMed37725977
UniProtP29016|CD1B_HUMAN T-cell surface glycoprotein CD1b (Gene Name=CD1B)

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