Structure of PDB 8gj8 Chain A Binding Site BS01

Receptor Information
>8gj8 Chain A (length=257) Species: 6376 (Alvinella pompejana) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SGPVTILDLLKDERSQLSIVTFSEQLDQILGGGVPLTKITEICGAPGVGK
TQLSMQLSVDVQIPKCFGGVEGQAIYIDTEGSFIVDRVVDIATATVQHCQ
HIASIENNAEQADSMQSLTMESILEGIHYFRCHDYVQLLALVHTLPDFLK
QHPQICLIVVDSIAFPFRHHFEDYALRTRLLNGLAQSFIKLAVDFKLAVL
LTNQMTTKISSWGHSSTIRLILYWQEKSRYALLYKSPSHKQISVPFQITT
AGIRDVC
Ligand information
Ligand IDADP
InChIInChI=1S/C10H15N5O10P2/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(24-10)1-23-27(21,22)25-26(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1
InChIKeyXTWYTFMLZFPYCI-KQYNXXCUSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)OP(=O)(O)O)O)O)N
CACTVS 3.341Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O
ACDLabs 10.04O=P(O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
CACTVS 3.341Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)O)O)O)N
FormulaC10 H15 N5 O10 P2
NameADENOSINE-5'-DIPHOSPHATE
ChEMBLCHEMBL14830
DrugBankDB16833
ZINCZINC000012360703
PDB chain8gj8 Chain A Residue 402 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8gj8 RAD51C-XRCC3 structure and cancer patient mutations define DNA replication roles.
Resolution2.3 Å
Binding residue
(original residue number in PDB)		P119 G120 G122 K123 T124 Q125 R160 R317 I336 T337
Binding residue
(residue number reindexed from 1)		P46 G47 G49 K50 T51 Q52 R87 R229 I248 T249
Annotation score4
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Fri Nov 15 18:58:14 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '8gj8', asym_id = 'A', bs = 'BS01', title = 'RAD51C-XRCC3 structure and cancer patient mutations define DNA replication roles.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='8gj8', asym_id='A', bs='BS01', title='RAD51C-XRCC3 structure and cancer patient mutations define DNA replication roles.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003677,0005524,0006281,0140664', uniprot = '', pdbid = '8gj8', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003677,0005524,0006281,0140664', uniprot='', pdbid='8gj8', asym_id='A')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>