Structure of PDB 8gfm Chain A Binding Site BS01

Receptor Information
>8gfm Chain A (length=512) Species: 197 (Campylobacter jejuni) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
YSIEKLKKEENSLAKDYYIYRLLEKNKISKKDAQDLNSHIFRYIGKIKSE
LEKIIPLKPYINPKYAKCYTYTANTILDANLTCQSVRLNSLVFIASLNSK
DRTTLAQTFKNQRPDLTNLLLAFNTSDPMSYIVQKEDINGFFKLYNYSKK
YDLDLNTSLVNKLPNHIGFKDFAQNIIIKKENPKFRHSMLEINPENVSED
SAFYLGVNALTYDKTELAYDFFKKAAQSFKSQSNKDNAIFWMWLIKNNEE
DLKTLSQSSSLNIYSLYAKELTNTPFPKIESLNPSKKKNNFNMQDPFAWQ
KINKQIRDANASQLDVLAKEFDTQETLPIYAYILERKNNFKKHYFIMPYY
DNIKDYNKTRQALILAIARQESRFIPTAISVSYALGMMQFMPFLANHIGE
KELKIPNFDQDFMFKPEIAYYFGNYHLNYLESRLKSPLFVAYAYNGGIGF
TNRMLARNDMFKTGKFEPFLSMELVPYQESRIYGKKVLANYIVYRHLLND
SIKISDIFENLI
Ligand information
Ligand ID4AM
InChIInChI=1S/C11H18N2O7/c1-4(15)13-8-5(12)2-7(11(18)19)20-10(8)9(17)6(16)3-14/h2,5-6,8-10,14,16-17H,3,12H2,1H3,(H,13,15)(H,18,19)/t5-,6+,8+,9+,10+/m0/s1
InChIKeyNKENBBIXEGPQLS-UFGQHTETSA-N
SMILES
SoftwareSMILES
CACTVS 3.341CC(=O)N[C@@H]1[C@@H](N)C=C(O[C@H]1[C@H](O)[C@H](O)CO)C(O)=O
CACTVS 3.341CC(=O)N[CH]1[CH](N)C=C(O[CH]1[CH](O)[CH](O)CO)C(O)=O
OpenEye OEToolkits 1.5.0CC(=O)NC1C(C=C(OC1C(C(CO)O)O)C(=O)O)N
OpenEye OEToolkits 1.5.0CC(=O)N[C@@H]1[C@H](C=C(O[C@H]1[C@@H]([C@@H](CO)O)O)C(=O)O)N
ACDLabs 10.04O=C(O)C=1OC(C(O)C(O)CO)C(NC(=O)C)C(C=1)N
FormulaC11 H18 N2 O7
Name4-AMINO-2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID;
4-amino-Neu5Ac2en
ChEMBLCHEMBL52270
DrugBankDB03321
ZINCZINC000005884083
PDB chain8gfm Chain A Residue 601 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8gfm Exploring the inhibition of the soluble lytic transglycosylase Cj0843c of Campylobacter jejuni via targeting different sites with different scaffolds.
Resolution2.38 Å
Binding residue
(original residue number in PDB)		E390 Q408 M410 L413 Y463 N464
Binding residue
(residue number reindexed from 1)		E371 Q389 M391 L394 Y444 N445
Annotation score1
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sat Nov 16 22:47:25 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '8gfm', asym_id = 'A', bs = 'BS01', title = 'Exploring the inhibition of the soluble lytic tr...geting different sites with different scaffolds. '
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='8gfm', asym_id='A', bs='BS01', title='Exploring the inhibition of the soluble lytic tr...geting different sites with different scaffolds. ')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0000270,0008933,0016020', uniprot = '', pdbid = '8gfm', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0000270,0008933,0016020', uniprot='', pdbid='8gfm', asym_id='A')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>