Structure of PDB 8fa0 Chain A Binding Site BS01

Receptor Information
>8fa0 Chain A (length=336) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VWKDADTTLFCASDAKAHETEVHNVWATHACVPTDPNPQEIHLENVTENF
NMWKNNMVEQMQEDVISLWDQSLQPCVKLSVIKQACPKISFDPIPIHYCT
PAGYVILKCNDKNFNGTGPCKNVSSVQCTHGIKPVVSTQLLLNGSLAEEE
IIIRSENLTNNAKTIIVHLNKSVEINCTRPSNGDIRKAYCEINGTKWNKV
LKQVTEKLKEHFNNKTIIFQPPSGGDLEITMHSFNCRGEFFYCNTTQLFN
NTCINGTITLPCKIKQIINMWQGTGQAMYAPPIDGKINCVSNITGILLTR
DGGANNTSNETFRPGGGNIKDNWRSELYKYKVVQIE
Ligand information
Ligand IDXKR
InChIInChI=1S/C18H17ClF2N4O3S/c19-16-9(20)3-8(4-10(16)21)11-1-2-12(23-11)17(28)24-13(5-22)18-25-14(6-26)15(7-27)29-18/h1-4,13,23,26-27H,5-7,22H2,(H,24,28)/t13-/m0/s1
InChIKeyWFPSRMKUJDKZKQ-ZDUSSCGKSA-N
SMILES
SoftwareSMILES
CACTVS 3.385NC[CH](NC(=O)c1[nH]c(cc1)c2cc(F)c(Cl)c(F)c2)c3sc(CO)c(CO)n3
CACTVS 3.385NC[C@H](NC(=O)c1[nH]c(cc1)c2cc(F)c(Cl)c(F)c2)c3sc(CO)c(CO)n3
ACDLabs 12.01O=C(NC(CN)c1nc(CO)c(CO)s1)c1ccc([NH]1)c1cc(F)c(Cl)c(F)c1
OpenEye OEToolkits 2.0.7c1cc([nH]c1c2cc(c(c(c2)F)Cl)F)C(=O)N[C@@H](CN)c3nc(c(s3)CO)CO
OpenEye OEToolkits 2.0.7c1cc([nH]c1c2cc(c(c(c2)F)Cl)F)C(=O)NC(CN)c3nc(c(s3)CO)CO
FormulaC18 H17 Cl F2 N4 O3 S
NameN-{(1S)-2-amino-1-[4,5-bis(hydroxymethyl)-1,3-thiazol-2-yl]ethyl}-5-(4-chloro-3,5-difluorophenyl)-1H-pyrrole-2-carboxamide;
NBD-14208
ChEMBLCHEMBL4788936
DrugBank
ZINC
PDB chain8fa0 Chain A Residue 509 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8fa0 Antiviral Activity and Crystal Structures of HIV-1 gp120 Antagonists.
Resolution2.09 Å
Binding residue
(original residue number in PDB)
S256 T257 D368 E370 F376 F382 N425 M426 W427
Binding residue
(residue number reindexed from 1)
S137 T138 D226 E228 F234 F240 N269 M270 W271
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology

View graph for
Cellular Component
External links
PDB RCSB:8fa0, PDBe:8fa0, PDBj:8fa0
PDBsum8fa0
PubMed36555641
UniProtA0A0M3KKW8

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