Structure of PDB 8ea8 Chain A Binding Site BS01

Receptor Information
>8ea8 Chain A (length=120) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ESYCGPCPKNWICYKNNCYQFFDEEKNWYESQASCMSQNASLLKVYSKED
QDLLKLVKSYHWMGLVHIPGSWQWEDGSSLSPNLLTIIEMQKGDCALYAS
SFKGYIENCSTPNTYICMQR
Ligand information
Ligand IDVML
InChIInChI=1S/C24H19F6N3O2/c1-33(2)22(35)20(15-4-3-5-17(12-15)24(28,29)30)32-21(34)19-13-31-11-10-18(19)14-6-8-16(9-7-14)23(25,26)27/h3-13,20H,1-2H3,(H,32,34)/t20-/m0/s1
InChIKeyZMELGOOSPVFBKG-FQEVSTJZSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CN(C)C(=O)[C@H](c1cccc(c1)C(F)(F)F)NC(=O)c2cnccc2c3ccc(cc3)C(F)(F)F
CACTVS 3.385CN(C)C(=O)[CH](NC(=O)c1cnccc1c2ccc(cc2)C(F)(F)F)c3cccc(c3)C(F)(F)F
OpenEye OEToolkits 2.0.7CN(C)C(=O)C(c1cccc(c1)C(F)(F)F)NC(=O)c2cnccc2c3ccc(cc3)C(F)(F)F
CACTVS 3.385CN(C)C(=O)[C@@H](NC(=O)c1cnccc1c2ccc(cc2)C(F)(F)F)c3cccc(c3)C(F)(F)F
ACDLabs 12.01O=C(NC(c1cccc(c1)C(F)(F)F)C(=O)N(C)C)c1cnccc1c1ccc(cc1)C(F)(F)F
FormulaC24 H19 F6 N3 O2
NameN-{(1S)-2-(dimethylamino)-2-oxo-1-[3-(trifluoromethyl)phenyl]ethyl}-4-[4-(trifluoromethyl)phenyl]pyridine-3-carboxamide
ChEMBL
DrugBank
ZINC
PDB chain8ea8 Chain B Residue 404 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8ea8 Identification of small-molecule protein-protein interaction inhibitors for NKG2D.
Resolution1.77 Å
Binding residue
(original residue number in PDB)
I104 F113 L148 V149 K150 I210
Binding residue
(residue number reindexed from 1)
I12 F21 L56 V57 K58 I116
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Biological Process
GO:0045954 positive regulation of natural killer cell mediated cytotoxicity

View graph for
Biological Process
External links
PDB RCSB:8ea8, PDBe:8ea8, PDBj:8ea8
PDBsum8ea8
PubMed37098070
UniProtP26718|NKG2D_HUMAN NKG2-D type II integral membrane protein (Gene Name=KLRK1)

[Back to BioLiP]