Structure of PDB 8e3s Chain A Binding Site BS01

Receptor Information
>8e3s Chain A (length=503) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MSDRFVIWAPSMHNEPAAKCGYCHGNKGGNMDQLFALDSWAHRYMNKMDV
VKIENCTIGSFVEHMDVATYDRMCNMGFRRSGKFLYKVDPLRNCCRLYTI
RTAPQELNMTKELKKCISRFATRITSEDYCPAAVASSDFVGKIVNAEMNS
KTFYTRFEPALYSEEKYHLFVKYQEKVHQDYNNSPKSFKRFLCDTPFGPE
AVLGTQESWEQLNNWQRMKPGEKLKHMGPVHECYYYEGKLIAITVSDILP
SGISSVYFIWDPDYSKWSLGKLSALRDLAIIQRTNLQYYYLGYYIEDCPK
MNYKANYGAEVLDVCHSKYIPLKPIQDMISRGKLFVIGEEETKVTKELYL
VDSETGRGEGFPTDNVVKYKNIAEEIYGVGGCAFKSANESALELKELYGI
PYEEEDLDTIYHLKEHNGHAPNGIPNVVPGLLPLWELLDIMQSGKITDLE
GRLFLFEIETEGIRPLINFYSEPPNVKKRICDVIRLFGFETCMKAVILYS
EQM
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain8e3s Chain A Residue 601 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8e3s The structural basis of tRNA recognition by arginyl-tRNA-protein transferase
Resolution3.1 Å
Binding residue
(original residue number in PDB)		C20 C94 C95
Binding residue
(residue number reindexed from 1)		C20 C94 C95
Annotation score1
Enzymatic activity
Enzyme Commision number 2.3.2.8: arginyltransferase.
Gene Ontology
Molecular Function
GO:0004057 arginyl-tRNA--protein transferase activity
GO:0016746 acyltransferase activity
Biological Process
GO:0016598 protein arginylation
Cellular Component
GO:0005737 cytoplasm

View graph for
Molecular Function
View graph for
Biological Process
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Cellular Component
External links
PDB RCSB:8e3s, PDBe:8e3s, PDBj:8e3s
PDBsum8e3s
PubMed37076488
UniProtP16639|ATE1_YEAST Arginyl-tRNA--protein transferase 1 (Gene Name=ATE1)

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