Structure of PDB 8e0q Chain A Binding Site BS01

Receptor Information
>8e0q Chain A (length=1689) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MTSIHFVVHPLPGTEDQLNDRLREVSEKLNKYNLNSHPPLNVLEQATIKQ
CVVGPNHAAFLLEDGRVCRIGFSVQPDRLSPVSLGEDLQWWPDKDGTKFI
CIGALYSELLAVSSKGELYQWKWSESEPYRNAQNPSLHHPRATFLGLTNE
KIVLLSANSIRATVATENNKVATWVDETLSSVASKLEHTAQTYSELQGER
IVSLHCCALYTCAQLENSLYWWGVVPFSQRKKMLEKARAKNKPLYHAGAV
AFSISAGIPKVGVLMESVWNMNDSCRFQLRSPESLKNEEQWSLREVVFVE
DVTPKVPDCFQRTPKKLCIPEKTEILAVNVDSKGVHAVLKTGNWVRYCIF
DLATGKAEQENNFPTSSIAFLGQNERNVAIFTAGQESPIILRDGNGTIYP
MAKDCMGGIRDPDWLDLPPISSLGMGVHSLINLPANSTIKKKAAVIIMAV
EKQTLMQHILRCDYEACRQYLMNLEQAVVLEQNLQMLQTFISHRCDGNRN
ILHACVSVCFPTSNKVESKDRKANAHFILKLLCDSVVLQPYLRELLSAKD
ARGMTPFMSAVSGRAYPAAITILETAQKIAKAEISSSEKEEDVFMGMVCP
SGTNPDDSPLYVLCCNDTCSFTWTGAEHINQDIFECRTCGLLESLCCCTE
CARVCHKGHDCKLKRTSPTAYCDCWEKCKCKTLIAGQKSARLDLLYRLLT
ATNLVTLPNSRGEHLLLFLVQTVARQTVEHCQYRPPRIREDSDMPDHDLE
PPRFAQLALERVLQDWNALKSMIMFGSQENKDPLSASSRIGHLLPEEQVY
LNQQSGTIRLDCFTHCLIVKCTADILLLDTLLGTLVKELQNKYTPGRREE
AIAVTMRFLRSVARVFVILSVEMASSKKKNNFIPQPIGKCKRVFQALLPY
AVEELCNVAESLIVPVRMGIARPTAPFTLASTSIDAMQGSEELFSVEPLP
PRPSSMLDEPLERTTNSSHANGAAQAPRSMQWAVRNNASSYLTSASSLAR
AYSIVIRQISDLMGLIPKYNHLVYSQIPAAVKLTYQDAVNLQNYVEEKLI
PTWNWMVSIMDSTEAQLRYGSALASAGDPGHPNHPLHASQNSARRMSARG
DFLNYALSLMRSHNDEHSDVLPVLDVCSLKHVAYVFQALIYWIKAMNQQT
TETGQNHPFFRRSDSMTFLGCIPPNPFEVPLAEAIPLADQPHLLQPNARK
EDLFGRPSQGLYSSSASSGKCLMEVTVDRNCLEVLPTKMSPPLTSFRPQC
SFMGMVISHDMLLGRWRLSLELFGRVFMEDVGAEPGSILTELGGFEVKES
KFRREMEKLRNQQSRDLSLEVDRDRDLLIQQTMRQLNNHFGRRCATTPMA
VHRVKVTFKDEPGEGSGVARSFYTAIAQAFLSNEKLPNLECIQNDNAPLF
YQPGKRGFYTPRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVI
KVLLGRKVNWHDFAFFDPVMYESLRQLILASQSSDADAVFSAMDLAFAID
LCKEEGGGQVELIPNGVNIPVTPQNVYEYVRKYAEHRMLVVAEQPLHAMR
KGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTSFNDESGENAE
KLLQFKRWFWSIVEKMSMTERQDLVYFWTSSPSLPASEEGFQPMPSITIR
PPDDQHLPTANTCISRLYVPLYSSKQILKQKLLLAIKTK
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain8e0q Chain A Residue 2801 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8e0q Structure of the human UBR5 E3 ubiquitin ligase.
Resolution2.66 Å
Binding residue
(original residue number in PDB)		C1211 C1232
Binding residue
(residue number reindexed from 1)		C651 C672
Annotation score4
Enzymatic activity
Enzyme Commision number 2.3.2.26: HECT-type E3 ubiquitin transferase.
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0004842 ubiquitin-protein transferase activity
GO:0005515 protein binding
GO:0008270 zinc ion binding
GO:0016740 transferase activity
GO:0034450 ubiquitin-ubiquitin ligase activity
GO:0043130 ubiquitin binding
GO:0046872 metal ion binding
GO:0061630 ubiquitin protein ligase activity
Biological Process
GO:0000209 protein polyubiquitination
GO:0006281 DNA repair
GO:0006974 DNA damage response
GO:0010628 positive regulation of gene expression
GO:0016567 protein ubiquitination
GO:0033696 heterochromatin boundary formation
GO:0035519 protein K29-linked ubiquitination
GO:0042307 positive regulation of protein import into nucleus
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045879 negative regulation of smoothened signaling pathway
GO:0050847 progesterone receptor signaling pathway
GO:0070936 protein K48-linked ubiquitination
GO:0070979 protein K11-linked ubiquitination
GO:0071629 cytoplasm protein quality control by the ubiquitin-proteasome system
GO:0071630 nuclear protein quality control by the ubiquitin-proteasome system
GO:0090263 positive regulation of canonical Wnt signaling pathway
GO:0140455 cytoplasm protein quality control
GO:0140861 DNA repair-dependent chromatin remodeling
GO:0141198 protein branched polyubiquitination
Cellular Component
GO:0000785 chromatin
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0016020 membrane
GO:0032991 protein-containing complex
GO:0048471 perinuclear region of cytoplasm

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8e0q, PDBe:8e0q, PDBj:8e0q
PDBsum8e0q
PubMed37040767
UniProtO95071|UBR5_HUMAN E3 ubiquitin-protein ligase UBR5 (Gene Name=UBR5)

[Back to BioLiP]