Structure of PDB 8dek Chain A Binding Site BS01

Receptor Information
>8dek Chain A (length=440) Species: 239935 (Akkermansia muciniphila) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GAEFTRLPVSWTVNPRDAANARAAWKTLSAYHRGKPKSSRKLHVVYVTFK
DRPALEGYRERYDHILKNIQAYYADQMQANGFPPLTFQLDLDERGKLVIH
DAYVDKPMSEMSVQSSGPVSREAARKVLASKGIDIEKEHVLVVCQLPDGV
GPYYGGGFSHQGTGWTCDQEGLDPASFLDTEMMQGGRFKVTRGKNATIYI
GGTAHELGHSFGLPHTGDGWNYPDAGASLMGHGNSTYGDELRHEGKGAYL
APTDALKLASVPLFNGVETELPADASFGRMLGKYVPGSFERLEAIPVKDG
LRLKGRVHLTRPAYGIVAHLDPPGGSDYDSNAVGASLDEKGEFDLTICRP
GYKGGFIEMRVAVLNCDSTRSMITLPVWMDARGTKAPSLAQIVYFGDVQN
LWIRGRTEEARKALAEVERRHGSRSEVKEWLPVWKRALGR
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain8dek Chain A Residue 502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8dek A previously uncharacterized O-glycopeptidase from Akkermansia muciniphila requires the Tn-antigen for cleavage of the peptide bond.
Resolution2.5 Å
Binding residue
(original residue number in PDB)		H223 H227 H233
Binding residue
(residue number reindexed from 1)		H205 H209 H215
Annotation score4
Enzymatic activity
Enzyme Commision number ?
External links