Structure of PDB 8d2k Chain A Binding Site BS01

Receptor Information
>8d2k Chain A (length=1105) Species: 351607 (Acidothermus cellulolyticus 11B) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GTVPVTWRLGVDVGERSIGLAAVSYEEDKPKEILAAVSWIHDGGVGDERS
GASRLALRGMARRARRLRRFRRARLRDLDMLLSELGWTPLPDKNVSPVDA
WLARKRLAEEYVVDETERRRLLGYAVSHMARHRGWRNPWTTIKDLKNLPQ
PSDSWERTRESLEARYSVSLEPGTVGQWAGYLLQRAPGIRLNPTQQSLSN
ATAFETRLRQEDVLWELRCIADVQGLPEDVVSNVIDAVFCQKRPSVPAER
IGRDPLDPSQLRASRACLEFQEYRIVAAVANLRIRDGSGSRPLSLEERNA
VIEALLAQTERSLTWSDIALEILKLPNESDLTSVPEEDGPSSLAYSQFAP
FDETSARIAEFIAKNRRKIPTFAQWWQEQDRTSRSDLVAALADNSIAGLL
VHLPDAELEALEGLALPSGRVAYSRLTLSGLTRVMRDDGVDVHNARKTCF
GVDDNWRPPLPALHEATGHPVVDRNLAILRKFLSSATMRWGPPQSIVVEL
ARGASESRERQAEEEAARRAHRKANDRIRAELRASGLSDPSPADLVRARL
LELYDCHCMYCGAPISWENSELDHIVPRTDGGSNRHENLAITCGACNKEK
GRRPFASWAETSNRVQLRDVIDRVQKLKYSGNMYWTRDEFSRYKKSVVAR
LKRRTSDPEVIQSIESTGYAAVALRDRLLSYGEKNGVAQVAVFRGGVTAE
ARRWLDISIERLFSRVAIFAQSTSTKRLDRRHHAVDAVVLTTLTPGVAKT
LADARSRRVSASTEEPQSPAYRQWKESCSGLGDLLISTAARDSIAVAAPL
RLRPTGALHEETLRAFSEHTVGAAWKGAELRRIVEPEVYAAFLALTDPGG
RFLKVSPSEDVLPADENRHIVLSDRVLGPRDRVKLFPDDRGSIRVRGGAA
YIASFHHARVFRWGSSHSPSFALLRVSLADLAVAGLLRDGVDVFTAELPP
WTPAWRYASIALVKAVESGDAKQVGWLVPGDELDFGPEGVTTAAGDLSMF
LKYFPERHWVVTGFEDDKRINLKPAFLSAEQAEVLRTERSDRPDTLTEAG
EILAQFFPRCWRATVAKVLCHPGLTVIRRTALGQPRWRRGHLPYSWRPWS
ADPWS
Ligand information
>8d2k Chain B (length=102) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
gguaggauggcaagauccugguaugcuggggagccugaaaaggcuaccua
gcaagaccccuucguggggucgcauucuucacccccucgcgcgagggggu
uc
........................<<<<<<.<<<<......>>>>.>>>>
>>..<<<<<<.....>>>>>>.........<<<<<<<......>>>>>>>
..
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8d2k Coupled catalytic states and the role of metal coordination in Cas9
Resolution2.43 Å
Binding residue
(original residue number in PDB)
H47 D48 S59 R60 L61 A62 R64 R68 R69 R71 R72 L73 R74 R75 F76 R78 R82 L96 D98 K99 N100 V101 S102 P103 W107 H134 R137 H138 R139 G140 W141 P144 P193 G194 I195 R196 L197 N198 T200 Q201 Q253 K254 P256 S257 R262 R277 F282 Y285 R286 A439 Y440 R463 R474 H486 P487 R491 R497 K498 S501 S502 M505 R506 R519 H538 R539 N542 R546 S600 N601 R602 H603 K615 Y651 E682 R692 V709 R711 K766 L829 R830 L831 R832 T834 G835 A836 L837 H838 L842 R843 A844 R925 G969 V970 D971 V972 F973 T1109 L1111 Q1113 R1115 W1116 R1117 H1120 L1121 P1122
Binding residue
(residue number reindexed from 1)
H41 D42 S53 R54 L55 A56 R58 R62 R63 R65 R66 L67 R68 R69 F70 R72 R76 L90 D92 K93 N94 V95 S96 P97 W101 H128 R131 H132 R133 G134 W135 P138 P187 G188 I189 R190 L191 N192 T194 Q195 Q241 K242 P244 S245 R250 R265 F270 Y273 R274 A422 Y423 R446 R457 H469 P470 R474 R480 K481 S484 S485 M488 R489 R502 H521 R522 N525 R529 S583 N584 R585 H586 K598 Y634 E665 R675 V692 R694 K749 L800 R801 L802 R803 T805 G806 A807 L808 H809 L813 R814 A815 R896 G940 V941 D942 V943 F944 T1080 L1082 Q1084 R1086 W1087 R1088 H1091 L1092 P1093
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0003677 DNA binding
GO:0003723 RNA binding
GO:0004519 endonuclease activity
GO:0008270 zinc ion binding
GO:0046872 metal ion binding
Biological Process
GO:0051607 defense response to virus

View graph for
Molecular Function

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Biological Process
External links
PDB RCSB:8d2k, PDBe:8d2k, PDBj:8d2k
PDBsum8d2k
PubMed38348449
UniProtA0LWB3

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