Structure of PDB 8d1t Chain A Binding Site BS01

Receptor Information
>8d1t Chain A (length=330) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LVPGLVNLGNTCFMNSLLQGLSACPAFIRWLEEFTSQYSRDQKEPPSHQY
LSLTLLHLLKALSCQEVTDDEVLDASCLLDVLRMYRWQISSFEEQDAHEL
FHVITSSLEDERDGSGSHWKSQHPFHGRLTSNMVCKHCEHQSPVRFDTFD
SLSLSIPAATWGHPLTLDHCLHHFISSESVRDVVCDNCTKIEAKGTLNRT
TFVKQLKLGKLPQCLCIHLQRLSWSSHGTPLKRHEHVQFNEDLSMDEYKY
HSNASTYLFRLMAVVVHHGDMHSGHFVTYRRSPPSARNPLSTSNQWLWVS
DDTVRKASLQEVLSSSAYLLFYERVLEVLF
Ligand information
Ligand IDPXW
InChIInChI=1S/C24H23ClN4OS/c25-19-11-15(14-2-1-3-16(10-14)24(13-26)8-9-24)4-6-18(19)22(30)28-20-12-17-5-7-21(20)29(17)23(27)31/h1-4,6,10-11,17,20-21H,5,7-9,12H2,(H3,27,28,30,31)/p+1/t17-,20+,21+/m0/s1
InChIKeyQYJCMFNKFUMQPQ-IOMROCGXSA-O
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7c1cc(cc(c1)C2(CC2)C#N)c3ccc(c(c3)Cl)C(=O)NC4CC5CCC4[N+]5=C(N)S
ACDLabs 12.01S/C(N)=[N+]1\C2CC(NC(=O)c3ccc(cc3Cl)c3cccc(c3)C3(C#N)CC3)C1CC2
OpenEye OEToolkits 2.0.7c1cc(cc(c1)C2(CC2)C#N)c3ccc(c(c3)Cl)C(=O)N[C@@H]4C[C@@H]5CC[C@H]4[N+]5=C(N)S
CACTVS 3.385NC(S)=[N+]1[CH]2CC[CH]1[CH](C2)NC(=O)c3ccc(cc3Cl)c4cccc(c4)C5(CC5)C#N
CACTVS 3.385N\C(S)=[N+]/1[C@H]2CC[C@@H]/1[C@@H](C2)NC(=O)c3ccc(cc3Cl)c4cccc(c4)C5(CC5)C#N
FormulaC24 H24 Cl N4 O S
Name(1R,2R,4S,7E)-7-[amino(sulfanyl)methylidene]-2-{[(1P)-3-chloro-3'-(1-cyanocyclopropyl)[1,1'-biphenyl]-4-carbonyl]amino}-7-azabicyclo[2.2.1]heptan-7-ium
ChEMBL
DrugBank
ZINC
PDB chain8d1t Chain A Residue 601 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB8d1t TBD
Resolution2.94 Å
Binding residue
(original residue number in PDB)
N75 C77 F157 E158 L328 S329 W330 H444 M448 G451 H452 F453
Binding residue
(residue number reindexed from 1)
N10 C12 F92 E93 L222 S223 W224 H267 M271 G274 H275 F276
Annotation score1
Enzymatic activity
Enzyme Commision number 3.4.19.12: ubiquitinyl hydrolase 1.
Gene Ontology
Molecular Function
GO:0004843 cysteine-type deubiquitinase activity
Biological Process
GO:0016579 protein deubiquitination

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Molecular Function

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Biological Process
External links
PDB RCSB:8d1t, PDBe:8d1t, PDBj:8d1t
PDBsum8d1t
PubMed
UniProtQ70CQ3|UBP30_HUMAN Ubiquitin carboxyl-terminal hydrolase 30 (Gene Name=USP30)

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