Structure of PDB 8d0a Chain A Binding Site BS01

Receptor Information
>8d0a Chain A (length=322) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LVPGLVNLGNTCFMNSLLQGLSACPAFIRWLEEFTSQYSRDQKEPPSHQY
LSLTLLHLLKALSCQEVTDDEVLDASCLLDVLRMYRWQISSFEEQDAHEL
FHVITSSLEDERDGSGSHWKSQHPFHGRLTSNMVCKHCEHQSPVRFDTFD
SLSLSIPAATWGHPLTLDHCLHHFISSESVRDVVCDNCTKRTTFVKQLKL
GKLPQCLCIHLQRLSWSSHGTPLKRHEHVQFNEDLSMDEYKYHSNASTYL
FRLMAVVVHHGDMHSGHFVTYRRSPPSARNPLSTSNQWLWVSDDTVRKAS
LQEVLSSSAYLLFYERVLEVLF
Ligand information
Ligand IDPKH
InChIInChI=1S/C21H22ClN5OS/c22-15-7-12(18-10-24-9-17(25-18)11-1-2-11)3-5-14(15)20(28)26-16-8-13-4-6-19(16)27(13)21(23)29/h3,5,7,9-11,13,16,19H,1-2,4,6,8H2,(H3,23,26,28,29)/p+1/t13-,16+,19+/m0/s1
InChIKeyKZSNYGBGGXEVJT-URKNILKWSA-O
SMILES
SoftwareSMILES
CACTVS 3.385NC(S)=[N+]1[CH]2CC[CH]1[CH](C2)NC(=O)c3ccc(cc3Cl)c4cncc(n4)C5CC5
OpenEye OEToolkits 2.0.7c1cc(c(cc1c2cncc(n2)C3CC3)Cl)C(=O)NC4CC5CCC4[N+]5=C(N)S
CACTVS 3.385N\C(S)=[N+]1\[C@H]2CC[C@@H]1[C@@H](C2)NC(=O)c3ccc(cc3Cl)c4cncc(n4)C5CC5
ACDLabs 12.01N/C(S)=[N+]1/C2CC(NC(=O)c3ccc(cc3Cl)c3cncc(n3)C3CC3)C1CC2
OpenEye OEToolkits 2.0.7c1cc(c(cc1c2cncc(n2)C3CC3)Cl)C(=O)N[C@@H]4C[C@@H]\5CC[C@H]4/[N+]5=C(\N)/S
FormulaC21 H23 Cl N5 O S
Name~{N}-[(1~{R},2~{R},4~{S},7~{E})-7-[azanyl(sulfanyl)methylidene]-7$l^{4}-azabicyclo[2.2.1]heptan-2-yl]-2-chloranyl-4-(6-cyclopropylpyrazin-2-yl)benzamide
ChEMBL
DrugBank
ZINC
PDB chain8d0a Chain A Residue 601 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB8d0a TBD
Resolution3.19 Å
Binding residue
(original residue number in PDB)
C77 F157 Q160 L328 H444 D447 H452 F453
Binding residue
(residue number reindexed from 1)
C12 F92 Q95 L214 H259 D262 H267 F268
Annotation score1
Enzymatic activity
Enzyme Commision number 3.4.19.12: ubiquitinyl hydrolase 1.
Gene Ontology
Molecular Function
GO:0004843 cysteine-type deubiquitinase activity
Biological Process
GO:0016579 protein deubiquitination

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Molecular Function

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Biological Process
External links
PDB RCSB:8d0a, PDBe:8d0a, PDBj:8d0a
PDBsum8d0a
PubMed
UniProtQ70CQ3|UBP30_HUMAN Ubiquitin carboxyl-terminal hydrolase 30 (Gene Name=USP30)

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