Structure of PDB 8cnr Chain A Binding Site BS01

Receptor Information
>8cnr Chain A (length=548) Species: 523845 (Methanothermococcus thermolithotrophicus DSM 2095) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MRPSKMFCYQCQETAKNTGCTIIGVCGKKDNVANLQDLLVYTVKGLAVVR
ENLGYSNDKTDRYIVDALFTTITNVNFDDKDIIEKIKEGLALREEAASKS
TCPGCGGDLPDCATWTADSDDEIIKKANSLEVSVLATENEDVRSLRELLT
YGVKGIAAYLHHAMVLGYDNKDIHKFIRKALVATTDDSLSADELTALVLE
CGKYAVDTMALLDKANTETYGHPEITEVDIGVRNNPGILISGHDLKDLEQ
LLEQTKGTGVDVYTHSEMLPAHYYPAFKKYDHFVGNYGGSWWRQKEEFEA
FNGPIVMTTNCLVPPAESYKDRIYTTGVVGFPGLKRIPEDENGNKDFSEV
IEQAKKCAPPKQLETGKIVGGFAHNQVLALADKVVEAVKSGAIRKFVVMA
GCDGRHPSREYYTEFAKKLPNDTVILTAGCAKYRYNKLGLGDIGGIPRVL
DAGQCNDCYSLAVIALKLKEVFELDDINDLPIAFNVAWYEQKAVAVLLAL
LYLGVKDIVLGPTLPAFLSPNVAKVLVEKFGISGITTVDEDIERLINK
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain8cnr Chain A Residue 602 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8cnr Structural and biochemical elucidation of class I hybrid cluster protein natively extracted from a marine methanogenic archaeon.
Resolution1.45 Å
Binding residue
(original residue number in PDB)		E299 S318
Binding residue
(residue number reindexed from 1)		E299 S318
Annotation score4
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Fri Nov 15 19:53:39 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '8cnr', asym_id = 'A', bs = 'BS01', title = 'Structural and biochemical elucidation of class ...ly extracted from a marine methanogenic archaeon.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='8cnr', asym_id='A', bs='BS01', title='Structural and biochemical elucidation of class ...ly extracted from a marine methanogenic archaeon.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003824,0005737,0016491,0016661,0051536', uniprot = '', pdbid = '8cnr', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003824,0005737,0016491,0016661,0051536', uniprot='', pdbid='8cnr', asym_id='A')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>