Structure of PDB 8cmw Chain A Binding Site BS01

Receptor Information

>8cmw Chain A (length=669) Species: 246194 (Carboxydothermus hydrogenoformans Z-2901)

PRFRDLEHTSKPSKADRVWEPKNRKRTIDPAALEMLEKAEKDGVKTAFDR
FVEMQPQCQFGYKGLCCRFCLQGPCRLPNDDPSKKGICGASAWTIAARSV
GTLILTGAAAHNEHARHIAHALKELAEGKAPDYKITDPDKLRRIAQRLGL
DTQGKDDMTLAKEVAELALEDFARLPGFGENLWIKTTLNKERLEKYDECN
IMPSGIFGDISDLLAQAHIGNDDDPVNITFSALRVALTDYAGMHIATDFS
DVLFGTPKPIVTEANLGVLDANKVNIAVHGHNPLLSEKVVDAAKELEEEA
KAAGAEGINIVGMCCTGNEVLMRRGVHLATSFASSELAIVTGAMDAVVVD
VQCIMPGLKQVTECYHTRLITTSNIAKMPGTYHVPFHIENALESAKEIVR
LGIEAFKQRVGKPVHIPEVKHKVVAGFSFEALMEIFAHVNQENPIRVLND
AILSGQLKGVVLFAGCNNLKRPQDESHITILKEMLKNDVFVVTTGCSAQA
FAKHGFLRPEALELAGEGLKSFIKMLEEKAGLQGQLPPAFFMGSCVDNTR
ASDILVAMAKDLGVDTPKVPFVASAPEAMSGKAVSIGTWFVTLGVPVHVG
TMPPLEGSELFYSITTQIASDVYGGYFMFEVDPVVAARKILNALEYRTWK
LGVHKQTAEKFETALCQNY

Ligand information

>8cmw Chain D (length=1) Species: 32630 (synthetic construct)

C

Receptor-Ligand Complex Structure

Structure summary

• PDB: 8cmw A225L variant of the CODH/ACS complex of C. hydrogenoformans
• Resolution: 2.6 Å
• Binding residue (original residue number in PDB): H282 C316 S545 C546 V547 N549
• Binding residue (residue number reindexed from 1): H281 C315 S544 C545 V546 N548

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Mon Feb 17 02:07:25 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '8cmw', asym_id = 'A', bs = 'BS01', title = 'A225L variant of the CODH/ACS complex of C. hydrogenoformans'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='8cmw', asym_id='A', bs='BS01', title='A225L variant of the CODH/ACS complex of C. hydrogenoformans')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0003824,0006091,0016151,0016491,0043885,0051539', uniprot = '', pdbid = '8cmw', asym_id = 'A'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003824,0006091,0016151,0016491,0043885,0051539', uniprot='', pdbid='8cmw', asym_id='A')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>