Structure of PDB 8c3w Chain A Binding Site BS01
Receptor Information
>8c3w Chain A (length=211) Species:
32630
(synthetic construct) [
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VSLDQAILILVVAAKLGTTVEEAVKRALWLKTKLGVSLDQALRILSAAAN
TGTTVEEAVKRALKLKTKLGVSLEAALAILSAAAQLGTTVEEAVKRALKL
KTKLGVDLETAALALLTAAKLGTTVEEAVKRALKLKTKLGVSLIEALHIL
LTAAVLGTTVEEAVYRALKLKTKLGVSLLQAAAILILAARLGTTVEEAVK
RALKLKTKLGG
Ligand information
Ligand ID
HEM
InChI
InChI=1S/C34H34N4O4.Fe/c1-7-21-17(3)25-13-26-19(5)23(9-11-33(39)40)31(37-26)16-32-24(10-12-34(41)42)20(6)28(38-32)15-30-22(8-2)18(4)27(36-30)14-29(21)35-25;/h7-8,13-16H,1-2,9-12H2,3-6H3,(H4,35,36,37,38,39,40,41,42);/q;+2/p-2/b25-13-,26-13-,27-14-,28-15-,29-14-,30-15-,31-16-,32-16-;
InChIKey
KABFMIBPWCXCRK-RGGAHWMASA-L
SMILES
Software
SMILES
OpenEye OEToolkits 1.7.6
Cc1c2n3c(c1CCC(=O)O)C=C4C(=C(C5=[N]4[Fe]36[N]7=C(C=C8N6C(=C5)C(=C8C)C=C)C(=C(C7=C2)C)C=C)C)CCC(=O)O
CACTVS 3.385
CC1=C(CCC(O)=O)C2=Cc3n4[Fe]5|6|N2=C1C=c7n5c(=CC8=N|6C(=Cc4c(C)c3CCC(O)=O)C(=C8C=C)C)c(C)c7C=C
ACDLabs 12.01
C=1c3c(c(c4C=C5C(=C(C=6C=C7C(=C(C8=CC=2C(=C(C=1N=2[Fe](n34)(N5=6)N78)CCC(=O)O)C)\C=C)C)\C=C)C)C)CCC(=O)O
Formula
C34 H32 Fe N4 O4
Name
PROTOPORPHYRIN IX CONTAINING FE;
HEME
ChEMBL
DrugBank
DB18267
ZINC
PDB chain
8c3w Chain A Residue 302 [
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Receptor-Ligand Complex Structure
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PDB
8c3w
Design of Heme Enzymes with a Tunable Substrate Binding Pocket Adjacent to an Open Metal Coordination Site.
Resolution
1.6 Å
Binding residue
(original residue number in PDB)
D4 L8 K15 R43 S46 N50 E109 L113 I144 H148 L151 L179 Q180 A183 R190
Binding residue
(residue number reindexed from 1)
D4 L8 K15 R43 S46 N50 E109 L113 I144 H148 L151 L179 Q180 A183 R190
Annotation score
4
External links
PDB
RCSB:8c3w
,
PDBe:8c3w
,
PDBj:8c3w
PDBsum
8c3w
PubMed
37341421
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