Structure of PDB 8bz8 Chain A Binding Site BS01

Receptor Information
>8bz8 Chain A (length=603) Species: 1639 (Listeria monocytogenes) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DIKISVVVPTYNTELEGLKNLMASIDKQTMNPDEYELVFVDDGSTTDTYE
RLQEFAETRPNMTVKQIENSGWGSRPRNIATKMAKGEYILYLDHDDTVFP
ETFERVYNFGKENNLDVVSGKEVRTNGWSWGWKQFSENNPHAEEMGIECL
LPMTPHKFYKREFLLENDITFDDGARVLWEAVYFNSKAFIHGAKVGILAD
YPTYYWIATGANSFGRDPHEKWNQINKLFNFFKDNIKEQRDLDFMLTHWY
RSRVLGILGQWLLKNNNERIDIEFNYAKKLAEELIPAYISENLDKNNQVK
DYLLRQGDLDSLKKLAQIDAGITALSYVEDAYFKEDKLFFKTSTKMTYED
KEDFFIEKTADRMERILPEEIKSKLPKEFFDYSDDLAEFTYEPSIKGRNS
RATWKIDGSTSNVEVVNKKANLYKIEGEMSFSVQINDYILDAADKKQPWD
IATRFTGLGYTSHRALTIGKILIKTALINNKTMIVYKNASGLISLDVGSS
VRSIVEDSGVKREQILIDKTSGKVTIPLNEIHVFGESLIEGNAELKPVGI
SDADPINVKAKLIGEANKARVEVLLGDEKLSGEYHLVTNIQGKKDKQQIK
ITL
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0
[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain8bz8 Chain A Residue 701 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8bz8 Crystal structure of the L. monocytogenes RmlT D198A variant in complex with TDP-rhamnose
Resolution2.52 Å
Binding residue
(original residue number in PDB)
Y347 D370
Binding residue
(residue number reindexed from 1)
Y327 D350
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0016740 transferase activity
GO:0016757 glycosyltransferase activity
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:8bz8, PDBe:8bz8, PDBj:8bz8
PDBsum8bz8
PubMed
UniProtA0A401AAP7

[Back to BioLiP]