Structure of PDB 8bqr Chain A Binding Site BS01

Receptor Information
>8bqr Chain A (length=129) Species: 9031 (Gallus gallus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGS
TDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVS
DGNGMNAWVAWRNRCKGTDVQAWIRGCRL
Ligand information
Ligand IDR9H
InChIInChI=1S/C14H22N3O5S.C14H20N3O5S.Mn.6Mo.12H2O.6O/c2*18-6-14(7-19,8-20)17-11(21)4-2-1-3-10-12-9(5-23-10)15-13(22)16-12;;;;;;;;;;;;;;;;;;;;;;;;;/h9-10,12H,1-8H2,(H,17,21)(H2,15,16,22);1,3,9-10,12H,2,4-8H2,(H,17,21)(H2,15,16,22);;;;;;;;12*1H2;;;;;;/q2*+6;;6*+2;;;;;;;;;;;;;;;;;;/p-12/b;3-1+;;;;;;;;;;;;;;;;;;;;;;;;;/t2*9-,10-,12-;;;;;;;;;;;;;;;;;;;;;;;;;/m00........................./s1
InChIKeyFAMSJMQNBBSNDI-XDUIEFGPSA-B
SMILES
SoftwareSMILES
OpenEye OEToolkits 3.1.0.0C1C2C(C(S1)CCCCC(=O)NC34C[O+2]56[Mn]7891[O+2]%10(C3)[Mo]3%11([O+2]77[Mo]5(O3)(O[Mo]63([O+2]85CC(C7)(C[O+2]96[Mo]%10(O%11)(O[Mo]66([O+2]1(C4)[Mo]5(O3)(O6)([O])[O])([O])[O])([O])[O])NC(=O)CCC=CC1C3C(CS1)NC(=O)N3)([O])[O])([O])[O])([O])[O])NC(=O)N2
CACTVS 3.385O.O.O.O.O.O.O.O.O.O.O.O.O=C(CCCC[C@@H]1SC[C@@H]2NC(=O)N[C@H]12)NC34C[O++]56[Mo]78O[Mo]59O[Mo]%10%11O[Mo]%12%13O[Mo]%14%15O[Mo]%16(O7)[O++]%14(C3)[Mn]6%17%18([O++]%10%12C4)[O++]8%16CC(C[O++]9%11%17)(C[O++]%13%15%18)NC(=O)CC\C=C\[C@@H]%19SC[C@@H]%20NC(=O)N[C@H]%19%20
OpenEye OEToolkits 3.1.0.0C1[C@H]2[C@@H]([C@@H](S1)CCCCC(=O)NC34C[O+2]56[Mn]7891[O+2]%10(C3)[Mo]3%11([O+2]77[Mo]5(O3)(O[Mo]63([O+2]85CC(C7)(C[O+2]96[Mo]%10(O%11)(O[Mo]66([O+2]1(C4)[Mo]5(O3)(O6)([O])[O])([O])[O])([O])[O])NC(=O)CC/C=C/[C@H]1[C@@H]3[C@H](CS1)NC(=O)N3)([O])[O])([O])[O])([O])[O])NC(=O)N2
CACTVS 3.385O.O.O.O.O.O.O.O.O.O.O.O.O=C(CCCC[CH]1SC[CH]2NC(=O)N[CH]12)NC34C[O++]56[Mo]78O[Mo]59O[Mo]%10%11O[Mo]%12%13O[Mo]%14%15O[Mo]%16(O7)[O++]%14(C3)[Mn]6%17%18([O++]%10%12C4)[O++]8%16CC(C[O++]9%11%17)(C[O++]%13%15%18)NC(=O)CCC=C[CH]%19SC[CH]%20NC(=O)N[CH]%19%20
FormulaC28 H42 Mn Mo6 N6 O28 S2
NameAnderson-Evans polyoxometalate (biotin-functionalised)
ChEMBL
DrugBank
ZINC
PDB chain8bqr Chain A Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB8bqr Fine-tuning non-covalent interactions between hybrid metal-oxo clusters and proteins.
Resolution2.32 Å
Binding residue
(original residue number in PDB)		K1 F3 A11 R14 H15 S86 D87 R128
Binding residue
(residue number reindexed from 1)		K1 F3 A11 R14 H15 S86 D87 R128
Annotation score1
Enzymatic activity
Enzyme Commision number 3.2.1.17: lysozyme.
Gene Ontology
Molecular Function
GO:0003796 lysozyme activity
GO:0005515 protein binding
GO:0016231 beta-N-acetylglucosaminidase activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0042802 identical protein binding
Biological Process
GO:0016998 cell wall macromolecule catabolic process
GO:0031640 killing of cells of another organism
GO:0042742 defense response to bacterium
GO:0050829 defense response to Gram-negative bacterium
GO:0050830 defense response to Gram-positive bacterium
Cellular Component
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0005737 cytoplasm
GO:0005783 endoplasmic reticulum

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8bqr, PDBe:8bqr, PDBj:8bqr
PDBsum8bqr
PubMed37102318
UniProtP00698|LYSC_CHICK Lysozyme C (Gene Name=LYZ)

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