Structure of PDB 8b1v Chain A Binding Site BS01

Receptor Information
>8b1v Chain A (length=358) Species: 141617 (Tabernanthe iboga) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SPEEEHPVKAYGWAVKDRTTGILSPFKFSRRATGDNDIRIKILYCGICHT
DLTSVKNEYEFLSYPLVPGMEIVGIATEVGSKVTKIKVGEKVAVAAYLGT
CGKCYNCVNDLENYCPEVIIGYGTPYHDGTINYGGLSNETVVNERFVLRF
PEKLSPAGGAPLLSAGITAYSAMRNHGLDKPGIHLGVVGLGGLGHLAVKF
AKAFGVRVTVISTTPSKKDEAINNLGADAFLFSRDDKQMRAAIGTFDAII
DTLAVVHPIAPLLDLLRSHGKLVLVGAPSKPLELPTIPLLSGGKSLIGSA
AGNVKQTQEMLDFAAEHDITANIEVIPIDYINTAMERLDKGDIRFRFVVD
IENTLTPP
Ligand information
Ligand IDORZ
InChIInChI=1S/C23H27N2O4/c1-4-16-13-25-11-9-18-17-7-5-6-8-20(17)24-21(18)23(22(27)28-3,14-29-15(2)26)19(16)10-12-25/h4-8,13,19,24H,9-12,14H2,1-3H3/q+1/b16-4-/t19-,23-/m0/s1
InChIKeyYCGQEMDBJBQBSW-ISNKGDJGSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 3.1.0.0CC=C1C=[N+]2CCc3c4ccccc4[nH]c3C(C1CC2)(COC(=O)C)C(=O)OC
CACTVS 3.385COC(=O)[C@@]1(COC(C)=O)[C@H]\2CC[N@+](=CC\2=C/C)CCc3c1[nH]c4ccccc34
CACTVS 3.385COC(=O)[C]1(COC(C)=O)[CH]2CC[N+](=CC2=CC)CCc3c1[nH]c4ccccc34
OpenEye OEToolkits 3.1.0.0C/C=C\1/C=[N+]2CCc3c4ccccc4[nH]c3[C@@]([C@H]1CC2)(COC(=O)C)C(=O)OC
FormulaC23 H27 N2 O4
Nameprecondylocarpine acetate;
methyl (1~{S},2~{S},16~{E})-2-(acetyloxymethyl)-16-ethylidene-4-aza-14-azoniatetracyclo[12.2.2.0^{3,11}.0^{5,10}]octadeca-3(11),5(10),6,8,14-pentaene-2-carboxylate
ChEMBL
DrugBank
ZINC
PDB chain8b1v Chain A Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8b1v Expansion of the Catalytic Repertoire of Alcohol Dehydrogenases in Plant Metabolism.
Resolution1.882 Å
Binding residue
(original residue number in PDB)
T54 Y63 Y101 V122 I124 Y126
Binding residue
(residue number reindexed from 1)
T50 Y59 Y97 V118 I120 Y122
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0016491 oxidoreductase activity
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0045551 cinnamyl-alcohol dehydrogenase activity
GO:0046872 metal ion binding
Biological Process
GO:0009809 lignin biosynthetic process

View graph for
Molecular Function

View graph for
Biological Process
External links
PDB RCSB:8b1v, PDBe:8b1v, PDBj:8b1v
PDBsum8b1v
PubMed36198083
UniProtA0A5B8X8Z0

[Back to BioLiP]