Structure of PDB 8afj Chain A Binding Site BS01

Receptor Information
>8afj Chain A (length=197) Species: 160488 (Pseudomonas putida KT2440) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
IPEIDAFLGCPTPDAWIEAALADQETLLIDHKNCEFKAASTALSLIAKYN
THLDLINMMSRLAREELVHHEQVLRLMKRRGVPLRPVSAGRYASGLRRLV
RAHEPVKLVDTLVVGAFIEARSCERFAALVPHLDEELGRFYHGLLKSEAR
HYQGYLKLAHNYGDEADIARRVELVRAAEMELIQSPDQELRFHSGIP
Ligand information
Ligand IDFE
InChIInChI=1S/Fe/q+3
InChIKeyVTLYFUHAOXGGBS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
CACTVS 3.341
OpenEye OEToolkits 1.5.0		[Fe+3]
FormulaFe
NameFE (III) ION
ChEMBL
DrugBankDB13949
ZINC
PDB chain8afj Chain A Residue 302 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8afj tRNA modifying enzyme MiaE soaked in Na-dithionite in a glovebox and flash-cooled using a miniature-airlock
Resolution1.6 Å
Binding residue
(original residue number in PDB)		E38 E69 H72
Binding residue
(residue number reindexed from 1)		E35 E66 H69
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0045301 tRNA-(2-methylthio-N-6-(cis-hydroxy)isopentenyl adenosine)-hydroxylase activity
GO:0046872 metal ion binding
Biological Process
GO:0006400 tRNA modification

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:8afj, PDBe:8afj, PDBj:8afj
PDBsum8afj
PubMed
UniProtA0A179QS89

[Back to BioLiP]