Structure of PDB 8a33 Chain A Binding Site BS01

Receptor Information
>8a33 Chain A (length=133) Species: 160488 (Pseudomonas putida KT2440) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MINAQLLQSMVDASNDGIVVAEKEGDDTILIYVNAAFEYLTGYSRDEILY
QDCRFLQGDDRDQLGRARIRKAMAEGRPCREVLRNYRKDGSAFWNELSIT
PVKSDFDQRTYFIGIQEDVSRQVELERELAELR
Ligand information
Ligand IDJGC
InChIInChI=1S/C17H23N4O9P/c1-7-3-9-10(4-8(7)2)21(15-13(18-9)16(25)20-17(26)19-15)5-11(22)14(24)12(23)6-30-31(27,28)29/h3-4,11-14,18,22-24H,5-6H2,1-2H3,(H,20,25,26)(H2,27,28,29)/t11-,12+,13+,14-/m0/s1
InChIKeyJNFNEOXSUODPSY-DGAVXFQQSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)C3N2)CC(C(C(COP(=O)(O)O)O)O)O
OpenEye OEToolkits 2.0.7Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)[C@@H]3N2)C[C@@H]([C@@H]([C@@H](COP(=O)(O)O)O)O)O
CACTVS 3.385Cc1cc2N[CH]3C(=O)NC(=O)N=C3N(C[CH](O)[CH](O)[CH](O)CO[P](O)(O)=O)c2cc1C
CACTVS 3.385Cc1cc2N[C@H]3C(=O)NC(=O)N=C3N(C[C@H](O)[C@H](O)[C@H](O)CO[P](O)(O)=O)c2cc1C
FormulaC17 H23 N4 O9 P
NameFlavin mononucleotide (semi-quinone intermediate);
[(2R,3S,4S)-5-[(4aR)-7,8-dimethyl-2,4-bis(oxidanylidene)-4a,5-dihydrobenzo[g]pteridin-10-yl]-2,3,4-tris(oxidanyl)pentyl] dihydrogen phosphate
ChEMBL
DrugBank
ZINC
PDB chain8a33 Chain A Residue 500 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8a33 Crystal structure of PpSB1-LOV-K117E mutant (light state)
Resolution2.95 Å
Binding residue
(original residue number in PDB)
D52 C53 R54 L56 Q57 R61 R66 R70 N85 L97 I99 Q116
Binding residue
(residue number reindexed from 1)
D52 C53 R54 L56 Q57 R61 R66 R70 N85 L97 I99 Q116
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding

View graph for
Molecular Function
External links
PDB RCSB:8a33, PDBe:8a33, PDBj:8a33
PDBsum8a33
PubMed
UniProtQ88E39

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