Structure of PDB 7zgy Chain A Binding Site BS01

Receptor Information
>7zgy Chain A (length=949) Species: 243230 (Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SDFDALGGRVTTVETRVETVNNSLTGRIAALERNAFSVKPSLTIGYSVSR
TSRNFDVDRLFPLNADGTVANNAFTSGGIDTDTGAQRRDFGDFGNASDPV
VAGAAGLYGFADGVSYTVYFTDGSTATFDGLNPADYKVPTGKVIDTTKGR
NGFGFNNLARYKEGSTDIGISLGFDTSGQFSQVTSGTGGSLFSTAGRLQV
NQIDLNFGLVTGLPSDAYVDTNGNGKKDDGEATGRGTYLGSGGTAAILRD
PAGNVYRPVFFRFKNATTQFSVGNNPVIVTLGQQQKFYFSDYVFDNNYDG
RGDGFTVTVDGSNVPVIGAWKPQIKGVYGSRSGLDGTAEAGYGVYYRGVR
AQITPVGTLTAGIHYAQEGRDMFGAAQNTTSTPSDVTTYGADLHGKAFGV
ELHSEYATSRVRPNTANAAVQTSNAFYARVATRKDNLAFDLNTPAAKFGN
DTFGVSLYDLNYRKIDAGYNNVAGISEYGYGSYSRTSAQNIAYNPDTGVT
APFANLDRQAYTDANNDGTSDRNADGTVVATNTKIGQMGFGVKAAANLGP
VAIGGYYDTSTGANGDNANRMTEAGGSAKVAYSIFSLRGTYNTLDSNRPQ
IYRDAAGTQIIGDAKVRRYAVQADVTPGLGLFVGAYYRDVNVNGVRSTTD
RGLLGRGYLASSFEPGVGNNAYRTGLRCADNNFGTGTRDIDGVGGVLNPA
VNLDQSRTATCFTSYGVEAGHAGDNANALVKDLFFRVGYSRVYVPTTATA
TTGDFSGSVTYGDARYDRKVGVANVRLAGSFSTTNTQLDSRPAGTRGAVG
LIVRTDPLENVPFRPQFNGQVGYYTADNRVAAGNYNANATKYGAGVVLND
FLLPQTKIGVRYDGYMAQNRQYTPFDGDGTQGYFSDANNNRRTNLNGVYV
EGAYQDLIFSYGTYTLSQKDLNGVEYGSGINNGQPARGQTFKISYKVNF
Ligand information
Ligand IDJPI
InChIInChI=1S/C40H80O3/c1-30(19-13-21-32(3)22-14-23-33(4)25-16-28-39(7,8)43)17-11-12-18-31(2)20-15-24-34(5)26-27-36-35(6)37(41)29-38(42)40(36,9)10/h30-38,41-43H,11-29H2,1-10H3/t30-,31+,32-,33-,34-,35+,36+,37-,38-/m0/s1
InChIKeyHMWJPEUVPLHAER-VMKFVPKQSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7C[C@@H]1[C@H](C([C@H](CC1O)O)(C)C)CC[C@@H](C)CCC[C@H](C)CCCC[C@H](C)CCC[C@H](C)CCC[C@H](C)CCCC(C)(C)O
CACTVS 3.385C[CH](CCCC[CH](C)CCC[CH](C)CC[CH]1[CH](C)[CH](O)C[CH](O)C1(C)C)CCC[CH](C)CCC[CH](C)CCCC(C)(C)O
OpenEye OEToolkits 2.0.7CC1C(CC(C(C1CCC(C)CCCC(C)CCCCC(C)CCCC(C)CCCC(C)CCCC(C)(C)O)(C)C)O)O
CACTVS 3.385C[C@@H](CCCC[C@@H](C)CCC[C@H](C)CC[C@@H]1[C@@H](C)[C@@H](O)C[C@H](O)C1(C)C)CCC[C@H](C)CCC[C@H](C)CCCC(C)(C)O
FormulaC40 H80 O3
Name(3~{S},5~{R},6~{R})-5-[(3~{S},7~{R},12~{S},16~{S},20~{S})-3,7,12,16,20,24-hexamethyl-24-oxidanyl-pentacosyl]-4,4,6-trimethyl-cyclohexane-1,3-diol
ChEMBL
DrugBank
ZINC
PDB chain7zgy Chain A Residue 1201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7zgy The cryo-EM structure of the S-layer deinoxanthin-binding complex of Deinococcus radiodurans informs properties of its environmental interactions.
Resolution2.54 Å
Binding residue
(original residue number in PDB)
V527 G529 P540 Q541 I542 A569 Q570 A579 G580 I581 A609 D610 S622
Binding residue
(residue number reindexed from 1)
V309 G311 P322 Q323 I324 A351 Q352 A361 G362 I363 A391 D392 S404
Annotation score1
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:7zgy, PDBe:7zgy, PDBj:7zgy
PDBsum7zgy
PubMed35577074
UniProtQ9RRB6|SLPA_DEIRA Outer membrane protein SlpA (Gene Name=slpA)

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