Structure of PDB 7yzn Chain A Binding Site BS01

Receptor Information

>7yzn Chain A (length=453) Species: 272844 (Pyrococcus abyssi GE5) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

KRIRQPIIAVLGHVDHGKTTLLDRIRKTNVAAKEAGGITQHIGATEVPIE
VVKKIAGPLIKLWKAEIKLPGLLFIDTPGHEAFTSLRARGGSLADLAVLV
VDINEGFQPQTIESIEILRKYRTPFVVAANKIDRIKGWVIEEDEPFLMNI
KKQDQRAVQELETKLWELIGKFYEFGFQANRFDRVQNFTRELAIVPISAK
YGIGIAELLVLIAGLSQRYLEEKLKIEVEGPARGTILEVREEPGLGHTID
VIIYDGTLHKDDTIVVGGKDKAIVTKIRALLKPKPLDEIRDPRFRFDYVD
EVTAAAGVKIAAPGLEEALAGSPVIAAPTPEDVEKAKQEILEQIERVVIS
TDKVGVIVKADTLGSLEALSKELQEKEIPIRKADVGNVSKTDVMEALSVK
EEEPKYGVILGFNVKVNEDAEEVAKAKDVKIFVGNVIYKLIEDYEEWVKE
EEE

Ligand information

Ligand ID

InChI

InChI=1S/Mg/q+2

InChIKey

JLVVSXFLKOJNIY-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mg+2]
CACTVS 3.341	[Mg++]

Formula

Name

MAGNESIUM ION

PDB chain

7yzn Chain A Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

Global view

Local view

Structure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

PDB	7yzn Role of aIF5B in archaeal translation initiation.
Resolution	1.7 Å
Binding residue (original residue number in PDB)	T21 T41
Binding residue (residue number reindexed from 1)	T19 T39
Annotation score	1

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0003743	translation initiation factor activity
GO:0003924	GTPase activity
GO:0005525	GTP binding

	Biological Process
GO:0006413	translational initiation

View graph for
Molecular Function

View graph for
Biological Process

External links

PDB	RCSB:7yzn, PDBe:7yzn, PDBj:7yzn
PDBsum	7yzn
PubMed	35694843
UniProt	Q9UZK7\|IF2P_PYRAB Probable translation initiation factor IF-2 (Gene Name=infB)

[Back to BioLiP]