Structure of PDB 7yrk Chain A Binding Site BS01

Receptor Information
>7yrk Chain A (length=129) Species: 9031 (Gallus gallus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGS
TDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVS
DGNGMNAWVAWRNRCKGTDVQAWIRGCRL
Ligand information
Ligand IDJI6
InChIInChI=1S/C11H13NO4.Cu/c1-7(13)10(11(15)16)12-6-8-4-2-3-5-9(8)14;/h2-7,10,13-14H,1H3,(H,15,16);/q;+2/p-2/b12-6+;/t7-,10+;/m1./s1
InChIKeyRLMUPHKMYNMLMB-NBDMYRNNSA-L
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7C[C@H]([C@H]1C(=O)O[Cu]2[N]1=Cc3ccccc3O2)O
OpenEye OEToolkits 2.0.7CC(C1C(=O)O[Cu]2[N]1=Cc3ccccc3O2)O
CACTVS 3.385C[CH](O)[CH]1N=Cc2ccccc2O[Cu]OC1=O
CACTVS 3.385C[C@@H](O)[C@@H]1N=Cc2ccccc2O[Cu]OC1=O
FormulaC11 H11 Cu N O4
Name(6~{S})-6-[(1~{R})-1-oxidanylethyl]-2,4-dioxa-7$l^{4}-aza-3$l^{3}-cupratricyclo[7.4.0.0^{3,7}]trideca-1(13),7,9,11-tetraen-5-one
ChEMBL
DrugBank
ZINC
PDB chain7yrk Chain A Residue 203 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7yrk A novel hybrid protein composed of superoxide-dismutase-active Cu(II) complex and lysozyme.
Resolution0.92 Å
Binding residue
(original residue number in PDB)		R14 H15 D87 T89
Binding residue
(residue number reindexed from 1)		R14 H15 D87 T89
Annotation score1
Enzymatic activity
Enzyme Commision number 3.2.1.17: lysozyme.
Gene Ontology
Molecular Function
GO:0003796 lysozyme activity

View graph for
Molecular Function
External links
PDB RCSB:7yrk, PDBe:7yrk, PDBj:7yrk
PDBsum7yrk
PubMed37106030
UniProtP00698|LYSC_CHICK Lysozyme C (Gene Name=LYZ)

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