Structure of PDB 7xpv Chain A Binding Site BS01

Receptor Information
>7xpv Chain A (length=371) Species: 531310 (Marinactinospora thermotolerans) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RDISTAVVVTTISDGGFLDRLAPALRDAGARLIVIPDRNTGPALFAACER
HRRLGLDVVCPSVAEQQDLLERLAVPDLIPYHSDNRRNVGYLMAWMEGFD
VIVSMDDDNLPTTDDFVERHQVVCQGPRTQPVTASSDGWFNNCALLEVEP
TEVFPRGFPFHARPAHAQARTSVCERPADVRINAGLWLGDPDVDAITRLA
VRPNALAHSGGSVVLAEGTWCPVNAQNTAVHRDALPAYYFLRMGQPVDGV
PMERFGDIFSGYFVQVCAQHLGHAVRFGDPVVEHPRNEHDLLDDLHKEVP
AVRLLDDILDHLRDHPLEGGDYLETYESLSYALQEIAERVNGRAWSPDAR
AFLHRSAHLMRSWTGALRTVA
Ligand information
Ligand IDGRJ
InChIInChI=1S/C16H25N5O15P2/c1-4(22)11-8(24)10(26)15(34-11)35-38(30,31)36-37(28,29)32-2-5-7(23)9(25)14(33-5)21-3-18-6-12(21)19-16(17)20-13(6)27/h3-5,7-11,14-15,22-26H,2H2,1H3,(H,28,29)(H,30,31)(H3,17,19,20,27)/t4-,5+,7+,8-,9+,10-,11+,14+,15-/m0/s1
InChIKeyMBFMULBITZROEC-MREAOPIZSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7C[C@@H]([C@@H]1[C@H]([C@@H]([C@@H](O1)OP(=O)(O)OP(=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3nc(nc4O)N)O)O)O)O)O
CACTVS 3.385C[C@H](O)[C@H]1O[C@@H](O[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4c(O)nc(N)nc34)[C@@H](O)[C@@H]1O
OpenEye OEToolkits 2.0.7CC(C1C(C(C(O1)OP(=O)(O)OP(=O)(O)OCC2C(C(C(O2)n3cnc4c3nc(nc4O)N)O)O)O)O)O
CACTVS 3.385C[CH](O)[CH]1O[CH](O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)n3cnc4c(O)nc(N)nc34)[CH](O)[CH]1O
FormulaC16 H25 N5 O15 P2
Name[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanyl-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{S},3~{S},4~{S},5~{R})-3,4-bis(oxidanyl)-5-[(1~{S})-1-oxidanylethyl]oxolan-2-yl] hydrogen phosphate
ChEMBL
DrugBank
ZINC
PDB chain7xpv Chain A Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7xpv Structures of the NDP-pyranose mutase belonging to glycosyltransferase family 75 reveal residues important for Mn 2+ coordination and substrate binding.
Resolution2.4 Å
Binding residue
(original residue number in PDB)
T13 T14 I15 D40 H85 S86 D87 D109 D110 D111 R159 R257 D260 R289 N290 H292
Binding residue
(residue number reindexed from 1)
T10 T11 I12 D37 H82 S83 D84 D106 D107 D108 R156 R254 D257 R286 N287 H289
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:7xpv, PDBe:7xpv, PDBj:7xpv
PDBsum7xpv
PubMed36642179
UniProtG8HX37

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