Structure of PDB 7w2a Chain A Binding Site BS01

Receptor Information
>7w2a Chain A (length=354) Species: 32009 (Burkholderia gladioli pv. gladioli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LVPNDTRYSEQWGYASGVGGANLPKAWDITTGSDKVVVAVVDTGYRPHAD
LAANILPGYDFISDPDSANDGNGRDNNAADPGDWVTQQEVDDPNGPFYRC
QLDQFGNTFASNSSWHGTHVAGTIGAVSNNGTGVAGISWKGKILPVRVLG
KCGGTLSDIADGMRWAAGLSVPGAPANPNPASVLNFSLGGGGSCSRTYQN
AINAVVAKGATVVVAAGNEASPVSSSQPANCQNVIAVAATDINGRRASFT
NTGSLVKIAAPGVNILSTLNSGTKSPAADSYASYNGTSMATPHVAGTVAL
MLAANGSLTPSQILQKLQASARPFPSGSGCSTSTCGAGLLDAGAAVNAAR
QHHH
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain7w2a Chain A Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7w2a Crystal structure of a Burkholderia peptidase and modification of the substrate-binding site for enhanced hydrolytic activity toward gluten-derived pro-immunogenic peptides.
Resolution1.6 Å
Binding residue
(original residue number in PDB)		D118 D163 H229 V240 N243 T245 V247 S401
Binding residue
(residue number reindexed from 1)		D5 D50 H116 V127 N130 T132 V134 S288
Annotation score4
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Wed Nov 27 18:31:05 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '7w2a', asym_id = 'A', bs = 'BS01', title = 'Crystal structure of a Burkholderia peptidase an... toward gluten-derived pro-immunogenic peptides. '
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='7w2a', asym_id='A', bs='BS01', title='Crystal structure of a Burkholderia peptidase an... toward gluten-derived pro-immunogenic peptides. ')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0004252,0006508,0008236', uniprot = '', pdbid = '7w2a', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0004252,0006508,0008236', uniprot='', pdbid='7w2a', asym_id='A')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>