Structure of PDB 7vl2 Chain A Binding Site BS01

Receptor Information
>7vl2 Chain A (length=706) Species: 945713 (Ignavibacterium album JCM 16511) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SEKYFVKNGQPHFLISGEVHYFRINPKLWRNHLQLLKQTGADTVSTYIPW
DWHEIEEDDFDFEGKTHPARNLIRFIKLCKEENLDLIVKPGPYILAEYEN
QGLPSWLLKKLSKNAFALDENGNVISPDLVSYLSDEFLEYTFKWYDKVMP
IISKHQKEHYGPITMMQLCNEIGVFQWLSGKSDYNPKVINLYKEFIIQRY
KTIEKLNSVYSTNYNSFDDLKAPSGKIKLRSDYCAYFDFHLFFREYYNKY
ISILKNKIRSFGINIKLTHNIPGWIYGNASELPMLISTYSEIMKNHPDII
FGLDHIPEFVSFRNAHSDLACNKILEAMQPEAPVWAAEFQAGTREHHVKA
YAKDLETFYIASLAHGIKGFNYYMFSQGINPEGKGFYGKTFYFQTALDAA
SNKLALYDSIKKVNRFIRKEQKDLLRTNVNSEICVGFYKPYFFTELISSQ
LLKEKKLNVEELGLYIDPRFLREEILFNGLLRGLQTLNYNYDVVDLENCD
LKSLTAYKQLWITSAEFMDAETQNLLSEFVLNGGNLILYPAVPTLDNYLN
RCEILKNNFGIEFITKDSSHKVSAFGIEDVFTAFSKKQIYNDTNSKPIAF
TQENEICGIRKKIGKGELTILGFAFGYTSDEHLELIDKLVKLNKIKRELF
VSDKDIQFVVRENNKSRYIFFLNYHNERKTFNYRKSSKSEEISIAPFSYK
VIKENK
Ligand information
Ligand IDBW3
InChIInChI=1S/C8H16O6/c1-2-13-8-7(12)6(11)5(10)4(3-9)14-8/h4-12H,2-3H2,1H3/t4-,5-,6+,7-,8+/m1/s1
InChIKeyWYUFTYLVLQZQNH-CBQIKETKSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CCO[C@@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O
OpenEye OEToolkits 2.0.7CCOC1C(C(C(C(O1)CO)O)O)O
CACTVS 3.385CCO[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1O
CACTVS 3.385CCO[C@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O
FormulaC8 H16 O6
Name(2~{S},3~{R},4~{S},5~{S},6~{R})-2-ethoxy-6-(hydroxymethyl)oxane-3,4,5-triol;
Ethyl alpha-D-glucopyranoside
ChEMBLCHEMBL2059297
DrugBank
ZINCZINC000013518823
PDB chain7vl2 Chain A Residue 801 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB7vl2 Characterization and structural analyses of a novel glycosyltransferase acting on the beta-1,2-glucosidic linkages.
Resolution1.8 Å
Binding residue
(original residue number in PDB)
E176 W182 L183 G278 W279 I280 R349
Binding residue
(residue number reindexed from 1)
E171 W177 L178 G273 W274 I275 R344
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004565 beta-galactosidase activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0046872 metal ion binding
Biological Process
GO:0005975 carbohydrate metabolic process
Cellular Component
GO:0005773 vacuole

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:7vl2, PDBe:7vl2, PDBj:7vl2
PDBsum7vl2
PubMed35065074
UniProtI0AIT9

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