Structure of PDB 7ths Chain A Binding Site BS01

Receptor Information
>7ths Chain A (length=243) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DCGKPQVEPKKCPVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWV
LTAAHCLEKSPRPSSYKVILGAHQEVNLEPHVQEIEVSRLFLEPTRKDIA
LLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFGAGLLK
EAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCF
EKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVMRNN
Ligand information
Ligand IDI5Y
InChIInChI=1S/C43H52N8O6S/c44-29-33-8-10-34(11-9-33)30-45-42(54)38-27-31-12-16-36(17-13-31)47-41(53)20-22-51-25-23-50(24-26-51)21-4-7-40(52)46-35-18-14-32(15-19-35)28-39(43(55)48-38)49-58(56,57)37-5-2-1-3-6-37/h1-3,5-6,8-19,38-39,49H,4,7,20-30,44H2,(H,45,54)(H,46,52)(H,47,53)(H,48,55)/t38-,39+/m0/s1
InChIKeyIXYFBSOJHOQEEZ-ZESVVUHVSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7c1ccc(cc1)S(=O)(=O)NC2Cc3ccc(cc3)NC(=O)CCCN4CCN(CCC(=O)Nc5ccc(cc5)CC(NC2=O)C(=O)NCc6ccc(cc6)CN)CC4
CACTVS 3.385NCc1ccc(CNC(=O)[C@@H]2Cc3ccc(NC(=O)CCN4CCN(CCCC(=O)Nc5ccc(C[C@@H](N[S](=O)(=O)c6ccccc6)C(=O)N2)cc5)CC4)cc3)cc1
CACTVS 3.385NCc1ccc(CNC(=O)[CH]2Cc3ccc(NC(=O)CCN4CCN(CCCC(=O)Nc5ccc(C[CH](N[S](=O)(=O)c6ccccc6)C(=O)N2)cc5)CC4)cc3)cc1
ACDLabs 12.01NCc1ccc(cc1)CNC(=O)C1Cc2ccc(NC(=O)CCN3CCN(CCCC(=O)Nc4ccc(CC(NS(=O)(=O)c5ccccc5)C(=O)N1)cc4)CC3)cc2
OpenEye OEToolkits 2.0.7c1ccc(cc1)S(=O)(=O)N[C@@H]2Cc3ccc(cc3)NC(=O)CCCN4CCN(CCC(=O)Nc5ccc(cc5)C[C@H](NC2=O)C(=O)NCc6ccc(cc6)CN)CC4
FormulaC43 H52 N8 O6 S
Name(6S,9R,20R,23S)-N-{[4-(aminomethyl)phenyl]methyl}-20-[(benzenesulfonyl)amino]-3,13,21-trioxo-2,6,9,14,22-pentaazatetracyclo[23.2.2.2~6,9~.2~15,18~]tritriaconta-1(27),15,17,25,28,30-hexaene-23-carboxamide
ChEMBL
DrugBank
ZINC
PDB chain7ths Chain A Residue 801 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7ths Synthesis and Structural Characterization of Macrocyclic Plasmin Inhibitors.
Resolution1.8 Å
Binding residue
(original residue number in PDB)
H603 D646 R719 D735 S736 C737 Q738 T759 S760 W761 G762 G764 C765
Binding residue
(residue number reindexed from 1)
H55 D98 R171 D187 S188 C189 Q190 T211 S212 W213 G214 G216 C217
Annotation score1
Enzymatic activity
Enzyme Commision number 3.4.21.7: plasmin.
Gene Ontology
Molecular Function
GO:0004252 serine-type endopeptidase activity
Biological Process
GO:0006508 proteolysis

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Molecular Function

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Biological Process
External links
PDB RCSB:7ths, PDBe:7ths, PDBj:7ths
PDBsum7ths
PubMed36710259
UniProtP00747|PLMN_HUMAN Plasminogen (Gene Name=PLG)

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