Structure of PDB 7rnw Chain A Binding Site BS01

Receptor Information

>7rnw Chain A (length=303) Species: 2697049 (Severe acute respiratory syndrome coronavirus 2)

SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDML
NPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPK
YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGF
NIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI
TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDIL
GPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC
SGV

Ligand information

>7rnw Chain Y (length=10) Species: 32630 (synthetic construct)

YLQYAVRREA

Receptor-Ligand Complex Structure

Structure summary

• PDB: 7rnw Antiviral cyclic peptides targeting the main protease of SARS-CoV-2.
• Resolution: 2.35 Å
• Binding residue (original residue number in PDB): T25 T26 M49 F140 L141 N142 G143 C145 H163 H164 M165 E166 P168 R188 Q189 A191
• Binding residue (residue number reindexed from 1): T25 T26 M49 F140 L141 N142 G143 C145 H163 H164 M165 E166 P168 R188 Q189 A191

Enzymatic activity

• Enzyme Commision number: 2.1.1.56: mRNA (guanine-N(7))-methyltransferase.
  2.1.1.57: methyltransferase cap1.
  2.7.7.48: RNA-directed RNA polymerase.
  2.7.7.50: mRNA guanylyltransferase.
  3.1.13.-
  3.4.19.12: ubiquitinyl hydrolase 1.
  3.4.22.-
  3.4.22.69: SARS coronavirus main proteinase.
  3.6.4.12: DNA helicase.
  3.6.4.13: RNA helicase.
  4.6.1.-

Gene Ontology

Molecular Function

• GO:0008233 peptidase activity

Biological Process

• GO:0019082 viral protein processing

External links

• PDB: RCSB:7rnw, PDBe:7rnw, PDBj:7rnw
• PDBsum: 7rnw
• PubMed: 35432913
• UniProt: P0DTD1|R1AB_SARS2 Replicase polyprotein 1ab (Gene Name=rep)