Structure of PDB 7rdo Chain A Binding Site BS01

Receptor Information
>7rdo Chain A (length=139) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GPLIVPYNLPLPGGVVPRMLITILGTVKPNANRIALDFQRGNDVAFHFNP
RFNENNRRVIVCNTKLDNNWGREERQSVFPFESGKPFKIQVLVEPDHFKV
AVNDAHLLQYNHRVKKLNEISKLGISGDIDLTSASYTMI
Ligand information
Ligand ID4IW
InChIInChI=1S/C12H22O10Se2/c13-1-3-5(15)7(17)9(19)11(21-3)23-24-12-10(20)8(18)6(16)4(2-14)22-12/h3-20H,1-2H2/t3-,4-,5+,6+,7+,8+,9-,10-,11+,12+/m1/s1
InChIKeyYPCORAJAZUQWFF-ZFDCCPEWSA-N
SMILES
SoftwareSMILES
CACTVS 3.385OC[C@H]1O[C@@H]([Se][Se][C@@H]2O[C@H](CO)[C@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@@H](O)[C@H]1O
ACDLabs 12.01OC1C([Se][Se]C2OC(CO)C(O)C(O)C2O)OC(CO)C(O)C1O
CACTVS 3.385OC[CH]1O[CH]([Se][Se][CH]2O[CH](CO)[CH](O)[CH](O)[CH]2O)[CH](O)[CH](O)[CH]1O
OpenEye OEToolkits 2.0.7C(C1C(C(C(C(O1)[Se][Se]C2C(C(C(C(O2)CO)O)O)O)O)O)O)O
OpenEye OEToolkits 2.0.7C([C@@H]1[C@@H]([C@@H]([C@H]([C@@H](O1)[Se][Se][C@H]2[C@@H]([C@H]([C@H]([C@H](O2)CO)O)O)O)O)O)O)O
FormulaC12 H22 O10 Se2
Name(2R,3R,4S,5R,6S)-2-(hydroxymethyl)-6-{[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]diselanyl}oxane-3,4,5-triol (non-preferred name)
ChEMBL
DrugBank
ZINC
PDB chain7rdo Chain A Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7rdo Investigation of the Molecular Details of the Interactions of Selenoglycosides and Human Galectin-3.
Resolution1.99 Å
Binding residue
(original residue number in PDB)
H158 R162 W181 E184
Binding residue
(residue number reindexed from 1)
H47 R51 W70 E73
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0030246 carbohydrate binding

View graph for
Molecular Function
External links
PDB RCSB:7rdo, PDBe:7rdo, PDBj:7rdo
PDBsum7rdo
PubMed35269646
UniProtP17931|LEG3_HUMAN Galectin-3 (Gene Name=LGALS3)

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