Structure of PDB 7r9p Chain A Binding Site BS01

Receptor Information
>7r9p Chain A (length=287) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DPDIFNRDPRDHYDLLQRLGGGTYGEVFKARDKVSGDLVALKMVKMDDVS
TLQKEILILKTCRHANIVAYHGSYLWLQKLWICMEFCGAGSLQDIYQVTG
SLSELQISYVCREVLQGLAYLHSQKKIHRDIKGANILINDAGEVRLADFG
ISAQIGAELARRLEFIGTPYWMAPEVAAVALKGGYNELCDIWSLGITAIE
LAELQPPLFDVHPLRVLFLMTKSGYQPPRLKEKGKWSAAFHNFIKVTLTK
SPKKRPSATKMLSHQLVSQPGLNRGLILDLLDKLKNG
Ligand information
Ligand ID2WI
InChIInChI=1S/C19H19FN4O/c1-10-12(8-22-17-15(10)19(6-7-19)9-23-17)11-4-5-13(21)14(16(11)20)18(25)24(2)3/h4-5,8-9H,6-7,21H2,1-3H3
InChIKeyMPBBKYMTAPEIGF-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.385CN(C)C(=O)c1c(N)ccc(c1F)c2cnc3N=CC4(CC4)c3c2C
OpenEye OEToolkits 2.0.7Cc1c(cnc2c1C3(CC3)C=N2)c4ccc(c(c4F)C(=O)N(C)C)N
ACDLabs 12.01CN(C)C(=O)c1c(N)ccc(c2cnc3N=CC4(CC4)c3c2C)c1F
FormulaC19 H19 F N4 O
Name6-amino-2-fluoro-N,N-dimethyl-3-(4'-methylspiro[cyclopropane-1,3'-pyrrolo[2,3-b]pyridin]-5'-yl)benzamide
ChEMBL
DrugBank
ZINC
PDB chain7r9p Chain A Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7r9p Discovery of Spiro-azaindoline Inhibitors of Hematopoietic Progenitor Kinase 1 (HPK1).
Resolution2.27 Å
Binding residue
(original residue number in PDB)		L23 G24 Y28 A44 M91 E92 C94 G95 G97 D101 L144
Binding residue
(residue number reindexed from 1)		L19 G20 Y24 A40 M84 E85 C87 G88 G90 D94 L137
Annotation score1
Enzymatic activity
Enzyme Commision number 2.7.11.1: non-specific serine/threonine protein kinase.
Gene Ontology
Molecular Function
GO:0004672 protein kinase activity
GO:0005524 ATP binding
Biological Process
GO:0006468 protein phosphorylation

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:7r9p, PDBe:7r9p, PDBj:7r9p
PDBsum7r9p
PubMed35059127
UniProtQ92918|M4K1_HUMAN Mitogen-activated protein kinase kinase kinase kinase 1 (Gene Name=MAP4K1)

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