Structure of PDB 7pt1 Chain A Binding Site BS01

Receptor Information
>7pt1 Chain A (length=574) Species: 1120948 (Actinomycetospora chiangmaiensis DSM 45062) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ARQSVPVASLVAEFLQEHGVDRVFGLQGGHIQPIWDQLARRGVRIVDVRD
EGSAVHMAHAHTELTGQTAVAMVTAGPGVTNTVTAVANASVSRIPLLVIG
GCPPIPQSNMGPLQDIPHTAILEPITRLARTLRSADQVLREFDEAWARAS
GDRGEPGPVYLEIPTDVLRRDVPPALQMREHLRAKPKRRPQPHPDDVAAV
ADLIRAAEKPAIISGRGARTTDGTDLVRLLDASGAAYLDTQESRGLVPDS
HPAAVGSARSAVMRDTDLLITVGRQLDYQLGMGSPAVFPHAKVVRIADTA
SELIDNRRGEVEILAEPGAALAAIADALKDHTPDTSWRDELKAKHRKRAE
DYRQALHSTENGADGHIHPNRIFGALDALDGDVLDLGETIMIADGGDLLS
FGRLGITKARRYLDAGAFGCLGVATPFAIGAALAYPDRPVVAVTGDGAFG
ITATEIDTAVRHDAKIVVIVSNNRAWNIERYDQAENYGLVVGTDLADSDY
AGVARAFGAHGERVTDPAELEGAIRRALANAPALVDVVTTQDAASPDSGK
GLGFVPDYQALTPWNDAEVARRQE
Ligand information
Ligand IDTPW
InChIInChI=1S/C13H19N3O7P2S/c1-8-11(5-10-6-15-9(2)16-13(10)14)7-26-12(8)3-4-22-25(20,21)23-24(17,18)19/h6-7H,3-5H2,1-2H3,(H,20,21)(H2,14,15,16)(H2,17,18,19)
InChIKeyIOGGWTLVIZLGGZ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04O=P(O)(O)OP(=O)(O)OCCc1scc(c1C)Cc2c(nc(nc2)C)N
CACTVS 3.341Cc1ncc(Cc2csc(CCO[P](O)(=O)O[P](O)(O)=O)c2C)c(N)n1
CACTVS 3.341Cc1ncc(Cc2csc(CCO[P@](O)(=O)O[P](O)(O)=O)c2C)c(N)n1
OpenEye OEToolkits 1.5.0Cc1c(csc1CCOP(=O)(O)OP(=O)(O)O)Cc2cnc(nc2N)C
OpenEye OEToolkits 1.5.0Cc1c(csc1CCO[P@@](=O)(O)OP(=O)(O)O)Cc2cnc(nc2N)C
FormulaC13 H19 N3 O7 P2 S
Name2-{4-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-3-METHYLTHIOPHEN-2-YL}ETHYL TRIHYDROGEN DIPHOSPHATE;
3-DEAZA-THDP
ChEMBLCHEMBL1236381
DrugBank
ZINCZINC000038653211
PDB chain7pt1 Chain A Residue 701 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB7pt1 Mechanistic details of the actinobacterial lyase-catalyzed degradation reaction of 2-hydroxyisobutyryl-CoA.
Resolution1.553 Å
Binding residue
(original residue number in PDB)
G410 D411 L412 G433 L435 G459 D460 G461 A462 N487 A489 W490 N491 I492 E493
Binding residue
(residue number reindexed from 1)
G396 D397 L398 G419 L421 G445 D446 G447 A448 N473 A475 W476 N477 I478 E479
Annotation score1
Enzymatic activity
Enzyme Commision number 4.1.-.-
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0003824 catalytic activity
GO:0003984 acetolactate synthase activity
GO:0016829 lyase activity
GO:0030976 thiamine pyrophosphate binding
GO:0046872 metal ion binding
GO:0050660 flavin adenine dinucleotide binding
Biological Process
GO:0009097 isoleucine biosynthetic process
GO:0009099 L-valine biosynthetic process
Cellular Component
GO:0005948 acetolactate synthase complex

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:7pt1, PDBe:7pt1, PDBj:7pt1
PDBsum7pt1
PubMed34952003
UniProtP0DUV9|HACL_ACTC0 2-hydroxyacyl-CoA lyase

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