Structure of PDB 7pia Chain A Binding Site BS01

Receptor Information
>7pia Chain A (length=240) Species: 272634 (Mycoplasmoides pneumoniae M129) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SLAKLGEMRTHVGMVKRYWNPKMGFFIEPERKHNNDHFVLELQRQSLQTA
YNYVKEVAQNNGQILFVGTKNDYVKKLVNNIAKRVDVAFITQRWLGGTLT
NFKTLSISINKLNKLVEKQAENAADLTKKENLMLSREIERLEKFFGGVKS
LKRLPNLLIVDDPVYEKNAVAEANILRIPVVALCNTNTNPELVDFIIPAN
NHQPQSTCLLMNLLADAVAEAKAMPTMFAYKPDEEIQIEI
Ligand information
>7pia Chain 5 (length=1493) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ucugagaguuugauccuggcucaggauuaacgcuggcggcaugccuaaua
caugcaagucgaucgaaaguaguaauacuuuagaggcgaacgggugagua
acacguauccaaucuaccuuauaaugggggauaacuaguugaaagacuag
cuaauaccgcauaagaacuuugguucgaaucaaaguugaaaggaccugca
aggguucguuauuugaugagggugcgccauaucagcuaguugguggggua
acggccuaccaaggcaaugacguguagcuaugcugagaaguagaauagcc
acaaugggacugagacacggcccauacuccuacgggaggcagcaguaggg
aauuuuucacaaugagcgaaagcuugauggagcaaugccgcgugaacgau
gaaggucuuuaagauuguaaaguucuuuuauuugggaagaaugacuuuag
cagguaauggcuagaguuugacuguaccauuuugaauaagugacgacuaa
cuaugugccagcagucgcgguaauacauaggucgcaagcguuauccggau
uuauugggcguaaagcaagcgcaggcggauugaaaagucugguguuaaag
gcagcugcuuaacaguuguaugcauuggaaacuauuaaucuagagugugg
uagggaguuuuggaauuucauguggagcggugaaaugcguagauauauga
aggaacaccaguggcgaaggcgaaaacuuaggccauuacugacgcuuagg
cuugaaaguguggggagcaaauaggauuagauacccuaguaguccacacc
guaaacgauagauacuagcugucggggcgauccccucgguagugaaguua
acacauuaaguaucucgccuggguaguacauucgcaagaaugaaacucaa
acggaauugacggggacccgcacaagugguggagcauguugcuuaauucg
acgguacacgaaaaaccuuaccuagacuugacauccuuggcaaaguuaug
gaaacauaaugccgagugacagguggugcaugguugucgucagcucgugu
cgugagauguuggguuaagucccgcaacgagcgcaacccuuaucguuagu
uacauugucuagcgagacugcuaaugcaaauuggaggaaggaagggauga
cgucaaaucaucaugccccuuaugucuagggcugcaaacgugcuacaaug
gccaauacaaacagucgccagcuuguaaaagugagcaaaucuguaaaguu
ggucucaguucggauugagggcugcaauucguccucaugaagucggaauc
acuaguaaucgcgaaucagcuaugucgcggugaauacguucucgggucuu
guacacaccgcccgucaaacuaugaaagcugguaauauuuaaaaacgugu
ugcuaaccauuaggaagcgcaugucaaggauagcaccggugauuggaguu
aagucguaacaagguaccccuacgagaacguggggguggauca
.....<<<<..[.(((..>>>>...<<.<<<<<..<<<<<.<<.....<<
<.<<<..<<<..<<.<<<<<<....>>>>>>.>>>>>......<<.....
...<<<.<<................<.<<.....<<<<<......>>>>>
......>>.>.....<.<<<<..........>>>>.>....<<<<<<...
.>>>>>>.............>>.>>>.<<.....<<...<<<<<<<<...
....>>>>>>>>.>>.......>>..<<<..<<<....>>>.....>>>.
>>.<<<<<............>>>>>.<<<<....>>>>...>>>>>>...
......<<<....<<<<....>>>>..>>>..>>..>>>>>..<<<<...
.....<<.....>>.......>>>>.......<<<........<<<<<<<
<........>>>>>>>>.........>>>..........<<<<<((....
<<<<<.....<<..))>>.......>>>>>>>>>>..>>>>>>>......
......<<<((.....<<<<....<<.<<<<<...<<<<<.<<<<.....
<<<<<<<.....>>>>>>>..>>>>.>>>..>>..>>>>>...<<<.<<<
<...<<<<<<<....<<<<<<<<<..<<........>>.....>>>>>>>
>>...........<<....>>.>>>>>>>..>>>>..>>>...>>....>
>>>....<<<<<<<...<...<<<<.........>>>>...>>>>>>>>.
.........<<<<<<..<<<<<<<<<<......>>>>>>>>>>...<<..
))>>.....>>>>>>.>>>.<<<.....<<<<<....>>>>>...>>>..
..))).]..<.....<<<<..<<..<<<<..<<<<<<<<<........<<
........>>..........<<<<<<<........<............<<
....>>.........>....<<<.<<<..<<<<<........<<<<<<<<
<....>>>..<<<<......>>>>..>>>>>>.....<<<..<<<<<<<.
........>>>>>>>.....<<..........>>.........>>>....
......>...>>>>>>>>>>...>>>>>>>......>>>>>>>>.>...<
<<<<<......<<<..<<..<<<<....>>>>..>>....>>>.....>>
>>>>......<....<<<<<<<........>>>>>>>....>......>>
>>.......<<<<<..........>>>>>........>>....>>>>...
.>.......<..<<.<.<<<<.<<<..<<<<<<..<<<<.....<<<<<<
.<<<..<<....>>.>>>>>>>>>....>>>>..>>>>>>..>>>.>>>>
..>.>>...>.....<<<<<<<<<....>>>>>>>>>......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7pia Visualizing translation dynamics at atomic detail inside a bacterial cell.
Resolution13.6 Å
Binding residue
(original residue number in PDB)		R35 Y36 W37 N38 P39 K40 R49 Q110 R111 L113 G114 G115 T116 N119 T122 K129 T145 K146 K147 L150 M151 R154 E157 R158 K161 F162 F163 N186 E190
Binding residue
(residue number reindexed from 1)		R17 Y18 W19 N20 P21 K22 R31 Q92 R93 L95 G96 G97 T98 N101 T104 K111 T127 K128 K129 L132 M133 R136 E139 R140 K143 F144 F145 N168 E172
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7pia, PDBe:7pia, PDBj:7pia
PDBsum7pia
PubMed36171285
UniProtP75560|RS2_MYCPN Small ribosomal subunit protein uS2 (Gene Name=rpsB)

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