Structure of PDB 7pas Chain A Binding Site BS01

Receptor Information
>7pas Chain A (length=240) Species: 272634 (Mycoplasmoides pneumoniae M129) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SLAKLGEMRTHVGMVKRYWNPKMGFFIEPERKHNNDHFVLELQRQSLQTA
YNYVKEVAQNNGQILFVGTKNDYVKKLVNNIAKRVDVAFITQRWLGGTLT
NFKTLSISINKLNKLVEKQAENAADLTKKENLMLSREIERLEKFFGGVKS
LKRLPNLLIVDDPVYEKNAVAEANILRIPVVALCNTNTNPELVDFIIPAN
NHQPQSTCLLMNLLADAVAEAKAMPTMFAYKPDEEIQIEI
Ligand information
>7pas Chain 5 (length=1493) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ucugagaguuugauccuggcucaggauuaacgcuggcggcaugccuaaua
caugcaagucgaucgaaaguaguaauacuuuagaggcgaacgggugagua
acacguauccaaucuaccuuauaaugggggauaacuaguugaaagacuag
cuaauaccgcauaagaacuuugguucgaaucaaaguugaaaggaccugca
aggguucguuauuugaugagggugcgccauaucagcuaguugguggggua
acggccuaccaaggcaaugacguguagcuaugcugagaaguagaauagcc
acaaugggacugagacacggcccauacuccuacgggaggcagcaguaggg
aauuuuucacaaugagcgaaagcuugauggagcaaugccgcgugaacgau
gaaggucuuuaagauuguaaaguucuuuuauuugggaagaaugacuuuag
cagguaauggcuagaguuugacuguaccauuuugaauaagugacgacuaa
cuaugugccagcagucgcgguaauacauaggucgcaagcguuauccggau
uuauugggcguaaagcaagcgcaggcggauugaaaagucugguguuaaag
gcagcugcuuaacaguuguaugcauuggaaacuauuaaucuagagugugg
uagggaguuuuggaauuucauguggagcggugaaaugcguagauauauga
aggaacaccaguggcgaaggcgaaaacuuaggccauuacugacgcuuagg
cuugaaaguguggggagcaaauaggauuagauacccuaguaguccacacc
guaaacgauagauacuagcugucggggcgauccccucgguagugaaguua
acacauuaaguaucucgccuggguaguacauucgcaagaaugaaacucaa
acggaauugacggggacccgcacaagugguggagcauguugcuuaauucg
acgguacacgaaaaaccuuaccuagacuugacauccuuggcaaaguuaug
gaaacauaaugccgagugacagguggugcaugguugucgucagcucgugu
cgugagauguuggguuaagucccgcaacgagcgcaacccuuaucguuagu
uacauugucuagcgagacugcuaaugcaaauuggaggaaggaagggauga
cgucaaaucaucaugccccuuaugucuagggcugcaaacgugcuacaaug
gccaauacaaacagucgccagcuuguaaaagugagcaaaucuguaaaguu
ggucucaguucggauugagggcugcaauucguccucaugaagucggaauc
acuaguaaucgcgaaucagcuaugucgcggugaauacguucucgggucuu
guacacaccgcccgucaaacuaugaaagcugguaauauuuaaaaacgugu
ugcuaaccauuaggaagcgcaugucaaggauagcaccggugauuggaguu
aagucguaacaagguaccccuacgagaacguggggguggauca
.....<<<<..[.(((..>>>>.<<<<.<<<<<..<<<<<<<<.<....<
.......<<<..<<.<<<<<<....>>>>>>.>>>>>......<<.....
...<<<<<<<..<<...<...<<<.<.<<.....<<<<<<....>>>>>>
......>>.>.....<<<<<<<<<....>>>>>>>>>....<<<<<<...
.>>>>>>.>>>...>..>>>>>>>>>.<<<....<<<..<<<<<<<<...
....>>>>>>>>>>>......>>>..<<<<<<<<....>>>>...>>>>.
>>.<<<<<............>>>>>.<<<<<..>>>>>.......>..>.
......<<<....<<<<....>>>>..>>>..>>.>>>>>>..<<<<...
....<<<.....>>>......>>>>.......<<<........<<<<<<<
<........>>>>>>>>.........>>>..........<<<<<(((...
<<<<<.....<<.)))>>.......>>>>>>>>>>..>>>>>>>>>....
......<<<((.....<<<<...<<<.<<<<<<..<<<<<<<<<<.....
<<<<<<<.....>>>>>>>..>>>>>>>>..>>.>>>>>>...<<<.<<<
<...<<<<<<<....<<<<<.<<<..<<........>>.....>>>.>>>
>>...........<<....>>.>>>>>>>..>>>>..>>>...>>>...>
>>>...<<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>>>>.
.>.......<<<<<<..<<<<<<<<<<......>>>>>>>>>>...<<..
))>>.....>>>>>>.>>>.<<......<<<<<....>>>>>....>>..
..))).]<<<<<..<<<<<<.<<..<<<<...<<<<<.<<<<......<<
........>>..........<<<<<<<......<<<<<........<<<<
....>>>>.....>>>.>>.<<<.<<<..<<<<<<.<.....<<<<<<<<
<....>>>..<<<<......>>>>..>>>>>>.....<<<<.<<<<.<..
.........>.>>>>.....<<<<<....>>>>>........>>>>....
.>...>>>...>>>>>>>>>...>>>>>>>...>>.>>.>>>>>.....<
<<<<<<.....<<<..<<..<<<<....>>>>..>>....>>>....>>>
>>>>......<..<.<<<<<<..........>>>>>>>...>......>>
>>.....<<<<<<<..........>>>>>>>......>>...>>>>>>.>
>>.>>....<.<.<...<<<<.<<...<<<<<<.....<.....<<<<<<
.<<<..<<....>>.>>>>>>>>>...>......>>>>>>...>>.>>>>
....>>...>.....<<<<<<<<<....>>>>>>>>>......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7pas Visualizing translation dynamics at atomic detail inside a bacterial cell.
Resolution16.0 Å
Binding residue
(original residue number in PDB)		R35 W37 P39 K50 N52 R111 L113 G114 T118 N119 T122 K146 K147 L150 M151 R154 E157 R158 L159 K161 F162 F163 N186
Binding residue
(residue number reindexed from 1)		R17 W19 P21 K32 N34 R93 L95 G96 T100 N101 T104 K128 K129 L132 M133 R136 E139 R140 L141 K143 F144 F145 N168
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
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Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7pas, PDBe:7pas, PDBj:7pas
PDBsum7pas
PubMed36171285
UniProtP75560|RS2_MYCPN Small ribosomal subunit protein uS2 (Gene Name=rpsB)

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