Structure of PDB 7p39 Chain A Binding Site BS01

Receptor Information
>7p39 Chain A (length=832) Species: 1598 (Limosilactobacillus reuteri) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VEAGPWENMAYSMDSNSINNIDGYISYTGWYRPYGTSQDGKTWYPTTVAD
WRPILMYVWPSKDVQAKFIQYFVNHGYENSNYGLTTGSVKDLSENTASIK
LNEVAQNLRYVIEQHIVAAKSTSQLANDINNFITTIPELSASSELPYGQV
IFVNNDNTSYADSKYRLMSRTINNQTGNDNDNSDNGYEFLTGIDIDNSNP
VVQAENLNWEYFLLNYGKLMGYNPDGNFDGFRIDAADHIDADVLDQTGQL
MDDMYHMKGNPQNANNHLSYNEGYRSSAARMLNKKGNPQLYMDYVGSTLG
NVLGRANNRDTISNLVTGSIVNRQNDVTENEATPNWSYVTNHDSRANLIN
GLISKDHPGAYKAEYANQAWQEFYADQKKTDKQYAQYNVPAQYAILLSNK
DTVPQIYYGDLYNETAQYMQEKSIYYDAITTLMKARKQFVSGGQTMTKLS
DNLIASVRYGKGVTNANSEGTDSLSRTSGMAVIVGNNPQMAEQTISINMG
RAHANEQYRNLLDTTDNGLTYNADGAENPETLTTDDNGILKVTVKGYSNP
YVSGYLGVWVPVVSGNQDVTTNAATVSADSNKIFESNAALDSHMIYQDFS
LYQPEPTSTENHAYNTIAQNAELFNNLGITDFWMAPPYTQYSESRYNDGY
SVTDRYNLGTNANPTKYGSGEELANAIAALHSAGLKVQVDIVMNQMIGLP
GQEAVTVTRADNRGIQTYVNGKTYANQMYFAYTTGGGNGQETYGGKYLSE
LQSKYPDLFTTRAISTGVAPDPTTRITKWSAKYENGTSLQNIGIGLAVKL
PNGEYAYLRSSDNKAFNTTLPETMSSADYYAN
Ligand information
Ligand IDAC1
InChIInChI=1S/C13H23NO8/c1-4-7(10(18)12(20)13(21)22-4)14-6-2-5(3-15)8(16)11(19)9(6)17/h2,4,6-21H,3H2,1H3/t4-,6+,7-,8-,9+,10+,11+,12-,13+/m1/s1
InChIKeyRBZIIHWPZWOIDU-ZCGMLSCUSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0CC1C(C(C(C(O1)O)O)O)NC2C=C(C(C(C2O)O)O)CO
CACTVS 3.341C[CH]1O[CH](O)[CH](O)[CH](O)[CH]1N[CH]2C=C(CO)[CH](O)[CH](O)[CH]2O
OpenEye OEToolkits 1.5.0C[C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)O)O)N[C@H]2C=C([C@H]([C@@H]([C@H]2O)O)O)CO
ACDLabs 10.04OC2C(NC1C=C(CO)C(O)C(O)C1O)C(OC(O)C2O)C
CACTVS 3.341C[C@H]1O[C@H](O)[C@H](O)[C@@H](O)[C@@H]1N[C@H]2C=C(CO)[C@@H](O)[C@H](O)[C@H]2O
FormulaC13 H23 N O8
Name4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose;
6-METHYL-5-(4,5,6-TRIHYDROXY-3-HYDROXYMETHYL-CYCLOHEX-2-ENYLAMINO)-TETRAHYDRO-PYRAN-2,3,4-TRIOL;
4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucose;
4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-D-glucose;
4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-glucose
ChEMBL
DrugBankDB02218
ZINCZINC000058638973
PDB chain7p39 Chain D Residue 3 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7p39 Insights into Broad-Specificity Starch Modification from the Crystal Structure of Limosilactobacillus Reuteri NCC 2613 4,6-alpha-Glucanotransferase GtfB.
Resolution2.9 Å
Binding residue
(original residue number in PDB)
D679 H683 E717 H787 D788 Y1095
Binding residue
(residue number reindexed from 1)
D234 H238 E272 H342 D343 Y650
Annotation score1
Enzymatic activity
Enzyme Commision number 2.4.1.5: dextransucrase.
Gene Ontology
Molecular Function
GO:0046527 glucosyltransferase activity
Biological Process
GO:0009250 glucan biosynthetic process

View graph for
Molecular Function

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Biological Process
External links
PDB RCSB:7p39, PDBe:7p39, PDBj:7p39
PDBsum7p39
PubMed34708648
UniProtA0A1Z2RUH3

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