Structure of PDB 7op6 Chain A Binding Site BS01

Receptor Information
>7op6 Chain A (length=837) Species: 226186 (Bacteroides thetaiotaomicron VPI-5482) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GNDTSEVMLLDTGWEFSQSGTEKWMPATVPGTVHQDLISHELLPNPFYGM
NEKKIQWVENEDWEYRTSFIVSEEQLNRDGIQLIFEGLDTYADVYLNGSL
LLKADNMFVGYTLPVKSVLRKGENHLYIYFHSPIRQTLPQYASNGFNYPA
DNDHHEKHLSVFSRKAPYSYGWDWGIRMVTSGVWRPVTLRFYDIATISDY
YVRQLSLTDENARLSNELIVNQIVPQKIPAEVRVNVSLNGTTVTEVKQQV
TLQPGINHITLPAEVTNPVRWMPNGWGTPTLYDFSAQIACGDRIVAEQSH
RIGLRTIRVVNEKDKDGESFYFEVNGIPMFAKGANYIPQDALLPNVTTER
YQTLFRDMKEANMNMVRIWGGGTYENNLFYDLADENGILVWQDFMFACTP
YPSDPTFLKRVEAEAVYNIRRLRNHASLAMWCGNNEILEALKYWGFEKKF
TPEVYQGLMHGYDKLFRELLPSTVKEFDSDRFYVHSSPYLANWGRPESWG
TGDSHNWGVWYGKKPFESLDTDLPRFMSEFGFQSFPEMKTIAAFAAPEDY
QIESEVMNAHQKSSIGNSLIRTYMERDYIIPESFEDFVYVGLVLQGQGMR
HGLEAHRRNRPYCMGTLYWQLNDSWPVVSWSSIDYYGNWKALHYQAKRAF
APVLINPIQQNDSLSVYLISDRLDTMEQMTLEMKVVDFDGKTLGKKIQVH
SLEVPANTSKCVYRAKLDGWLTPEDCRRSFLKLILKDKSGHQVAESVHFF
RKTKDLQLPPTSVSYQMKQTDGKCELTLFSSMLAKDIFIETPLQGARYSD
NFFDLLPGERKKVIITSPRIKKGEELPVNIKHIRETY
Ligand information
Ligand IDJIW
InChIInChI=1S/C7H15NO5/c8-3-2(1-9)4(10)6(12)7(13)5(3)11/h2-7,9-13H,1,8H2/t2-,3+,4+,5-,6-,7+/m0/s1
InChIKeySWVTZDDSAFUTKS-DOMFMGKQSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7C([C@H]1[C@H]([C@@H]([C@H]([C@H]([C@@H]1O)O)O)O)N)O
OpenEye OEToolkits 2.0.7C(C1C(C(C(C(C1O)O)O)O)N)O
CACTVS 3.385N[C@H]1[C@H](O)[C@@H](O)[C@@H](O)[C@H](O)[C@H]1CO
CACTVS 3.385N[CH]1[CH](O)[CH](O)[CH](O)[CH](O)[CH]1CO
FormulaC7 H15 N O5
Namebeta-D-manno-configured cyclophellitol aziridine, reacted form;
(1~{R},2~{S},3~{R},4~{S},5~{R},6~{R})-5-azanyl-6-(hydroxymethyl)cyclohexane-1,2,3,4-tetrol
ChEMBL
DrugBank
ZINC
PDB chain7op6 Chain A Residue 930 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7op6 Synthesis of broad-specificity activity-based probes for exo -beta-mannosidases.
Resolution2.05 Å
Binding residue
(original residue number in PDB)
D199 N461 E462 E555 W645
Binding residue
(residue number reindexed from 1)
D173 N435 E436 E529 W619
Annotation score1
Enzymatic activity
Enzyme Commision number 3.2.1.25: beta-mannosidase.
Gene Ontology
Molecular Function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004567 beta-mannosidase activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
Biological Process
GO:0005975 carbohydrate metabolic process
GO:0006516 glycoprotein catabolic process
Cellular Component
GO:0005576 extracellular region

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:7op6, PDBe:7op6, PDBj:7op6
PDBsum7op6
PubMed35015006
UniProtQ8AAK6

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