Structure of PDB 7ocq Chain A Binding Site BS01

Receptor Information
>7ocq Chain A (length=686) Species: 575584 (Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VLIFHGKPVHGAIFDMDGTMFDTERLRFQTLQQASQELIGQEFSHEYLMQ
CLGLSATTAEKLAQRLYGVDVPYKEIRKRADEMELEHIRKHGVPIKKGLV
QVLERLRKSGLRMAVATSSRRAIAEEYLINANVYKFFDVITCGDEVEQGK
PHPEIFLKAASQLHLDANQCLMFEDSENGLTSAHTSKGLTILLKDIKEPN
DEMLEKAHFYYDQMYDFLTDLDQFIPVMDMPEMQEPFPQSLNQLTVGIHG
FGAIGGGYIAQILSHWDGYTKPKRIIASTRNSLFREAVNAFGTYSIRYGQ
FSYDERIENMSIVDSDNEQQMLEMYTHSSLIALCLPEQAIESESKIIAKG
LYARFNSQCIEPLTFLIILNKVGAKYLVMKHLKEALLELTNDEDVTEHIL
KEHYFCDTVVNRMVSKLSNQNLYRQLRIKHNFLEQHLEDVEQEIEDCNKL
TPDQLNQASIYVDNMRRNFQPGHILQSMDLILFHSETDMPIYVEKGSPLL
EKLRQVVLVDQITDIQLIKNRLWNGVHAMLAWYASLMGYESIGVAMGDHL
VKAFAENLIAEVKQGLAIVLPNYAKDLDRMSQSFLDSCEYAFKDPCQRVA
RDPLRKLNHNERVMASIAVNIRHDLPYKNLLKGAALGYAYAIQFLEIEET
KAVEHLQQQIQNLDLSTAQRRQLEAELVQLIQYLFS
Ligand information
Ligand IDV8H
InChIInChI=1S/C16H26N2O15P2/c17-14(23)7-2-1-3-18(4-7)15-12(21)10(19)8(31-15)5-29-34(25,26)33-35(27,28)30-6-9-11(20)13(22)16(24)32-9/h1,3-4,8-13,15-16,19-22,24H,2,5-6H2,(H2,17,23)(H,25,26)(H,27,28)/t8-,9-,10-,11-,12-,13-,15-,16-/m1/s1
InChIKeyCORMEBAPIXUNEL-UDOSWUQBSA-N
SMILES
SoftwareSMILES
CACTVS 3.385NC(=O)C1=CN(C=CC1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH](O)[CH](O)[CH]3O)[CH](O)[CH]2O
CACTVS 3.385NC(=O)C1=CN(C=CC1)[C@@H]2O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@@H](O)[C@H](O)[C@@H]3O)[C@@H](O)[C@H]2O
OpenEye OEToolkits 2.0.7C1C=CN(C=C1C(=O)N)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)OP(=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)O)O)O)O)O
OpenEye OEToolkits 2.0.7C1C=CN(C=C1C(=O)N)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)OCC3C(C(C(O3)O)O)O)O)O
FormulaC16 H26 N2 O15 P2
Name[[(2~{R},3~{S},4~{R},5~{R})-5-(3-aminocarbonyl-4~{H}-pyridin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-3,4,5-tris(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate
ChEMBL
DrugBank
ZINC
PDB chain7ocq Chain A Residue 801 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7ocq Unidirectional mannitol synthesis of Acinetobacter baumannii MtlD is facilitated by the helix-loop-helix-mediated dimer formation.
Resolution2.9 Å
Binding residue
(original residue number in PDB)
G253 A254 I255 T280 R281 L336 L373 N374
Binding residue
(residue number reindexed from 1)
G252 A253 I254 T279 R280 L335 L369 N370
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0016491 oxidoreductase activity
GO:0016787 hydrolase activity
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:7ocq, PDBe:7ocq, PDBj:7ocq
PDBsum7ocq
PubMed35363566
UniProtD0C7J2

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