Structure of PDB 7mxf Chain A Binding Site BS01

Receptor Information
>7mxf Chain A (length=276) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EHVSFHVIQIFSFVNQSWARGQGSGWLDELQTHGWDSESGTIIFLHQWSK
GQFSNEELSDLELLFRFYLFGLTREIQDHASQDYSKYPFEVQVKAGCELH
SGGSPEGFFQVAFNGLDLLSFQQTTWVPSPGCGSLAQSVCHLLNHQYEGV
TETVYNLIRSTCPRFLLGLLDAGKMYVHRQVRPEAWLSSGPSPGPGRLQL
VCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANGTWYLRATLDVADG
EAAGLSCRVKHSSLEGQDIILYWRGS
Ligand information
Ligand IDZQ4
InChIInChI=1S/C39H79O8P/c1-7-8-9-10-11-17-30(2)18-12-19-31(3)20-13-21-32(4)22-14-23-33(5)24-15-25-34(6)26-16-27-46-48(44,45)29-36-38(42)39(43)37(41)35(28-40)47-36/h30-43H,7-29H2,1-6H3,(H,44,45)/t30-,31+,32+,33-,34+,35+,36-,37+,38+,39-/m0/s1
InChIKeyLLTWLOYZJCWIOT-JWDSMAJRSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CCCCCCC[C@H](C)CCC[C@@H](C)CCC[C@@H](C)CCC[C@H](C)CCC[C@@H](C)CCCOP(=O)(C[C@H]1[C@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O)O
OpenEye OEToolkits 2.0.7CCCCCCCC(C)CCCC(C)CCCC(C)CCCC(C)CCCC(C)CCCOP(=O)(CC1C(C(C(C(O1)CO)O)O)O)O
CACTVS 3.385CCCCCCC[CH](C)CCC[CH](C)CCC[CH](C)CCC[CH](C)CCC[CH](C)CCCO[P](O)(=O)C[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1O
CACTVS 3.385CCCCCCC[C@H](C)CCC[C@@H](C)CCC[C@@H](C)CCC[C@H](C)CCC[C@@H](C)CCCO[P](O)(=O)C[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]1O
ACDLabs 12.01OP(=O)(CC1OC(CO)C(O)C(O)C1O)OCCCC(C)CCCC(C)CCCC(C)CCCC(C)CCCC(C)CCCCCCC
FormulaC39 H79 O8 P
Name2,6-anhydro-1-deoxy-1-[(S)-hydroxy{[(4R,8S,12R,16R,20S)-4,8,12,16,20-pentamethylheptacosyl]oxy}phosphoryl]-D-glycero-D-galacto-heptitol
ChEMBL
DrugBank
ZINC
PDB chain7mxf Chain A Residue 303 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7mxf Rational design of a hydrolysis-resistant mycobacterial phosphoglycolipid antigen presented by CD1c to T cells.
Resolution2.0 Å
Binding residue
(original residue number in PDB)
V12 S29 H38 L66 L69 F70 Y73 V155 T158 F170
Binding residue
(residue number reindexed from 1)
V7 S24 H33 L61 L64 F65 Y68 V150 T153 F165
Annotation score1
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:7mxf, PDBe:7mxf, PDBj:7mxf
PDBsum7mxf
PubMed34536421
UniProtP29016|CD1B_HUMAN T-cell surface glycoprotein CD1b (Gene Name=CD1B);
P29017|CD1C_HUMAN T-cell surface glycoprotein CD1c (Gene Name=CD1C)

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