Structure of PDB 7mx4 Chain A Binding Site BS01

Receptor Information
>7mx4 Chain A (length=277) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EHVSFHVIQIFSFVNQSWARGQGSGWLDELQTHGWDSESGTIIFLHQWSK
GQFSNEELSDLELLFRFYLFGLTREIQDHASQDYSKYPFEVQVKAGCELH
SGGSPEGFFQVAFNGLDLLSFQQTTWVPSPGCGSLAQSVCHLLNHQYEGV
TETVYNLIRSTCPRFLLGLLDAGKMYVHRQVRPEAWLSSGPSPGPGRLQL
VCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANGTWYLRATLDVADG
EAAGLSCRVKHSSLEGQDIILYWRGSL
Ligand information
Ligand IDZPD
InChIInChI=1S/C39H79O8P/c1-7-8-9-10-11-17-30(2)18-12-19-31(3)20-13-21-32(4)22-14-23-33(5)24-15-25-34(6)26-16-27-46-48(44,45)47-36-28-35(29-40)37(41)39(43)38(36)42/h30-43H,7-29H2,1-6H3,(H,44,45)/t30-,31-,32-,33+,34-,35+,36+,37+,38+,39-/m0/s1
InChIKeyIWZOWMVCZCJZJF-CFXBQQDPSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CCCCCCCC(C)CCCC(C)CCCC(C)CCCC(C)CCCC(C)CCCOP(=O)(O)OC1CC(C(C(C1O)O)O)CO
CACTVS 3.385CCCCCCC[CH](C)CCC[CH](C)CCC[CH](C)CCC[CH](C)CCC[CH](C)CCCO[P](O)(=O)O[CH]1C[CH](CO)[CH](O)[CH](O)[CH]1O
ACDLabs 12.01OC1C(CC(OP(=O)(O)OCCCC(C)CCCC(C)CCCC(C)CCCC(C)CCCC(C)CCCCCCC)C(O)C1O)CO
CACTVS 3.385CCCCCCC[C@H](C)CCC[C@H](C)CCC[C@H](C)CCC[C@@H](C)CCC[C@H](C)CCCO[P](O)(=O)O[C@@H]1C[C@H](CO)[C@@H](O)[C@H](O)[C@@H]1O
OpenEye OEToolkits 2.0.7CCCCCCC[C@H](C)CCC[C@H](C)CCC[C@H](C)CCC[C@@H](C)CCC[C@H](C)CCCOP(=O)(O)O[C@@H]1C[C@@H]([C@H]([C@@H]([C@@H]1O)O)O)CO
FormulaC39 H79 O8 P
Name(4S,8R,12S,16S,20S)-4,8,12,16,20-pentamethylheptacosyl (1R,2S,3S,4R,5R)-2,3,4-trihydroxy-5-(hydroxymethyl)cyclohexyl hydrogen (R)-phosphate
ChEMBL
DrugBank
ZINC
PDB chain7mx4 Chain A Residue 302 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7mx4 Rational design of a hydrolysis-resistant mycobacterial phosphoglycolipid antigen presented by CD1c to T cells.
Resolution1.73 Å
Binding residue
(original residue number in PDB)
Q14 S29 H38 I47 F70 Y73 A100 G101 V155 T158 L162 F170
Binding residue
(residue number reindexed from 1)
Q9 S24 H33 I42 F65 Y68 A95 G96 V150 T153 L157 F165
Annotation score1
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:7mx4, PDBe:7mx4, PDBj:7mx4
PDBsum7mx4
PubMed34536421
UniProtP29016|CD1B_HUMAN T-cell surface glycoprotein CD1b (Gene Name=CD1B);
P29017|CD1C_HUMAN T-cell surface glycoprotein CD1c (Gene Name=CD1C)

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