Structure of PDB 7lvy Chain A Binding Site BS01

Receptor Information
>7lvy Chain A (length=431) Species: 32264 (Tetranychus urticae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LYDPFMKIFFIPMDAFGHVNACIGLARMLSEFEHQCIFAVPKRWCKPIEE
YNFKVEIVKDPTVPDDQDLQKKNGDFVNRYSHTLSKTPREQFIELLIPSI
NRDIHYAKIIDGQIPTILESIDPDLIIIDFYVTLPSVVNSGKPWIHLTSC
NPLNLYAGPNVPPSCFGLSIDTDPDTVISYKQFIAESMKDVKSDFDEWLV
SKGVKPEPFAISKSSPYLNVYSFPSDLDYSEFGPVPDKCFRLDHMVRLVQ
EDPLGFDEKFFDRPGKKILFSLGSMGAADVELMKRLVGILGKSKHLFIVS
KGLFHDKYELPENMIGAKFLNQMAILPRVDLVIHHGGNNTFVESLYFGKP
SIVLPLFGDQHDNGRRAEDKKIGRSFRPHHVTEDELLMAIDELLNDKELN
NRVLKIGENIRNSKSIDDFNKKIEEIIKVHK
Ligand information
Ligand IDUDP
InChIInChI=1S/C9H14N2O12P2/c12-5-1-2-11(9(15)10-5)8-7(14)6(13)4(22-8)3-21-25(19,20)23-24(16,17)18/h1-2,4,6-8,13-14H,3H2,(H,19,20)(H,10,12,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1
InChIKeyXCCTYIAWTASOJW-XVFCMESISA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.0C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)(O)OP(=O)(O)O)O)O
CACTVS 3.370O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O
CACTVS 3.370O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O
OpenEye OEToolkits 1.7.0C1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)O)O)O
ACDLabs 12.01O=P(O)(O)OP(=O)(O)OCC2OC(N1C(=O)NC(=O)C=C1)C(O)C2O
FormulaC9 H14 N2 O12 P2
NameURIDINE-5'-DIPHOSPHATE
ChEMBLCHEMBL130266
DrugBankDB03435
ZINCZINC000004490939
PDB chain7lvy Chain A Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB7lvy Crystal Structure of Tetur04g02350
Resolution1.85 Å
Binding residue
(original residue number in PDB)		G12 N15 R242 S269 S295 F314 L315 Q317 H330 N334 T335 E338
Binding residue
(residue number reindexed from 1)		G17 N20 R247 S274 S300 F319 L320 Q322 H335 N339 T340 E343
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0008194 UDP-glycosyltransferase activity
GO:0016740 transferase activity
GO:0016758 hexosyltransferase activity

View graph for
Molecular Function
External links
PDB RCSB:7lvy, PDBe:7lvy, PDBj:7lvy
PDBsum7lvy
PubMed
UniProtT1K1R5

[Back to BioLiP]