Structure of PDB 7lnt Chain A Binding Site BS01

Receptor Information

>7lnt Chain A (length=238) Species: 1291540 (Methanomethylophilus alvi)

SHMILIKLGGSVITDKSEYHKFNKETVSRLADEIRRSGQDVMVVHGAGSF
GHVIAKKYAIQDGHVDDGQIPAAARIMCDTRELSSMVVEELLAQGIPAVS
VAPGSCFVMEDGKLIVDNEEPIRRLADLGIMPVMFGDVVPDRKKGFAIVS
GDQCMEVLCRMFDPEKVVFVSDIDGLYTADPKTDKKARLIGEVTRKMEAM
LRMTDRNRRCYLVNGNAPNRLYSLLKGETVTCTVAKGG

Ligand information

• Ligand ID: WZT
• InChI: InChI=1S/C7H9O4P/c8-12(9,10)11-6-7-4-2-1-3-5-7/h1-5H,6H2,(H2,8,9,10)
• InChIKey: YTFJQDNGSQJFNA-UHFFFAOYSA-N
• SMILES:
  CACTVS 3.385: O[P](O)(=O)OCc1ccccc1
  OpenEye OEToolkits 2.0.7: c1ccc(cc1)COP(=O)(O)O
• Formula: C7 H9 O4 P
• Name: (phenylmethyl) dihydrogen phosphate
• ZINC: ZINC000002391325
• PDB chain: 7lnt Chain A Residue 302

Receptor-Ligand Complex Structure

Structure summary

• PDB: 7lnt Molecular Basis for the Substrate Promiscuity of Isopentenyl Phosphate Kinase from Candidatus methanomethylophilus alvus .
• Resolution: 2.35 Å
• Binding residue (original residue number in PDB): G44 A45 G49 H50 I146 S148 G149
• Binding residue (residue number reindexed from 1): G46 A47 G51 H52 I148 S150 G151
• Annotation score: 1

Enzymatic activity

• Enzyme Commision number: 2.7.4.26: isopentenyl phosphate kinase.

Gene Ontology

Molecular Function

• GO:0005524 ATP binding
• GO:0016301 kinase activity
• GO:0102043 isopentenyl phosphate kinase activity

Biological Process

• GO:0008299 isoprenoid biosynthetic process
• GO:0016310 phosphorylation

Cellular Component

• GO:0005829 cytosol

External links

• PDB: RCSB:7lnt, PDBe:7lnt, PDBj:7lnt
• PDBsum: 7lnt
• PubMed: 34905349
• UniProt: M9SEQ1