Structure of PDB 7ljm Chain A Binding Site BS01

Receptor Information

>7ljm Chain A (length=348) Species: 28901 (Salmonella enterica) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

LNSQFNAFLTNIRPTDPQKEDWKGGAKTLRERLNNYEPLKDIVVSTFLQG
SIRRSTAIRPLNGKRPDVDIVVVTNLDHNQIAPQEAMDLFVPFLEKYYPE
KWVPQGRSFGITLSYVELDLVITAIPASGEEKNLLEQLYRSESVLTVNSL
EEQKDWRLNKSWKPSESGNSANIQDAPLSEWKAHPLVLPDRDENKWGRTH
PLAQIRWTAEKNRACNGHYINLVRAVKWWRQQNSDNLPKYPKGYPLEHLI
GNALDDGTPSMGKGLVQLIDTFLSRWAYVYSLRSKPSLPDHGVEEHDVLA
RLSAEDFCLFYEGLEDAAIIARSALASQDPKESAELWRKLFGTKFPFP

Ligand information

Ligand ID

InChI

InChI=1S/Mg/q+2

InChIKey

JLVVSXFLKOJNIY-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mg+2]
CACTVS 3.341	[Mg++]

Formula

Name

MAGNESIUM ION

PDB chain

7ljm Chain A Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	7ljm Molecular basis of CD-NTase nucleotide selection in CBASS anti-phage defense.
Resolution	2.6 Å
Binding residue (original residue number in PDB)	D69 D71 D121
Binding residue (residue number reindexed from 1)	D67 D69 D119
Annotation score	1

Enzymatic activity

Enzyme Commision number

2.7.7.-

Gene Ontology

	Molecular Function
GO:0005525	GTP binding
GO:0016779	nucleotidyltransferase activity
GO:0046872	metal ion binding

	Biological Process
GO:0009117	nucleotide metabolic process
GO:0051607	defense response to virus

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Molecular Function

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Biological Process

External links

PDB	RCSB:7ljm, PDBe:7ljm, PDBj:7ljm
PDBsum	7ljm
PubMed	34077735
UniProt	A0A728KSL7\|CDND_SALEB Probable cyclic AMP-AMP-GMP nucleotide synthase (Gene Name=cdnD)

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