Structure of PDB 7l2r Chain A Binding Site BS01

Receptor Information
>7l2r Chain A (length=615) Species: 10116 (Rattus norvegicus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAML
NLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRN
MTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAI
VKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEIL
ILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECR
HLSRKFTEWAYGPVHSSLYDLSCIDTCEKNSVLEVIAYSSSETPNRHDML
LVEPLNRLLQDKWDRFVKRIFYFNFFVYCLYMIIFTAAAYYRPVEGLPPY
KLKNTVGDYFRVTGEILSVSGGVYFFFRGIQYFLQRRPSLKSLFVDSYSE
ILFFVQSLFMLVSVVLYFSQRKEYVASMVFSLAMGWTNMLYYTRGFQQMG
IYAVMIEKMILRDLCRFMFVYLVFLFGFSTAVVTLIEDGKYNSLYSTCLE
LFKFTIGMGDLEFTENYDFKAVFIILLLAYVILTYILLLNMLIALMGETV
NKIAQESKNIWKLQRAITILDTEKSFLKCMRKAFRSGKLLQVGFTPDGKD
DYRWCFRVDEVNWTT
Ligand information
Ligand IDXJ7
InChIInChI=1S/C26H49O13P/c1-3-5-6-7-8-9-10-11-12-13-15-20(28)38-18(16-36-19(27)14-4-2)17-37-40(34,35)39-26-24(32)22(30)21(29)23(31)25(26)33/h18,21-26,29-33H,3-17H2,1-2H3,(H,34,35)/t18-,21-,22+,23-,24-,25+,26+/m0/s1
InChIKeyPJDJYKJPFGJDMA-QYTLEKTISA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CCCCCCCCCCCCC(=O)OC(COC(=O)CCC)COP(=O)(O)OC1C(C(C(C(C1O)O)O)O)O
OpenEye OEToolkits 2.0.7CCCCCCCCCCCCC(=O)O[C@@H](COC(=O)CCC)COP(=O)(O)OC1[C@@H]([C@H](C([C@H]([C@@H]1O)O)O)O)O
CACTVS 3.385CCCCCCCCCCCCC(=O)O[C@@H](COC(=O)CCC)CO[P](O)(=O)O[C@@H]1[C@@H](O)[C@H](O)[C@H](O)[C@H](O)[C@H]1O
ACDLabs 12.01CCCC(=O)OCC(COP(OC1C(C(C(C(O)C1O)O)O)O)(O)=O)OC(CCCCCCCCCCCC)=O
CACTVS 3.385CCCCCCCCCCCCC(=O)O[CH](COC(=O)CCC)CO[P](O)(=O)O[CH]1[CH](O)[CH](O)[CH](O)[CH](O)[CH]1O
FormulaC26 H49 O13 P
Name(2S)-1-(butanoyloxy)-3-{[(R)-hydroxy{[(1r,2R,3S,4S,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propan-2-yl tridecanoate
ChEMBL
DrugBank
ZINC
PDB chain7l2r Chain A Residue 801 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7l2r Structural snapshots of TRPV1 reveal mechanism of polymodal functionality.
Resolution3.3 Å
Binding residue
(original residue number in PDB)
D509 Y511 S512 E570
Binding residue
(residue number reindexed from 1)
D396 Y398 S399 E457
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005216 monoatomic ion channel activity
Biological Process
GO:0006811 monoatomic ion transport
GO:0055085 transmembrane transport
Cellular Component
GO:0016020 membrane

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:7l2r, PDBe:7l2r, PDBj:7l2r
PDBsum7l2r
PubMed34496225
UniProtO35433|TRPV1_RAT Transient receptor potential cation channel subfamily V member 1 (Gene Name=Trpv1)

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