Structure of PDB 7js7 Chain A Binding Site BS01

Receptor Information
>7js7 Chain A (length=494) Species: 1890 (Streptomyces antibioticus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PPTPHLDAIERSLRDTSPGLEGSVWQRTDGNRLDAPDGDPAGWLLQTPGC
WGDAGCKDRAGTRRLLDKMTRNIADARHTVDISSLAPFPNGGFEDAVVDG
LKASVAAGHSPRVRILVGAAPIYHLNVVPSRYRDELIGKLGAAAGKVTLN
VASMTTSKTSLSWNHSKLLVVDGKTAITGGINTNKDDYLDTAHPVSDVDM
ALSGPAARSAGKYLDTLWDWTCRNASDPAKVWLATSNGASCMPSMEQDEA
GSAPAEPTGDVPVIAVGGLGVGIKESDPSSGYHPDLPTAPDTKCTVGLHD
NTNADRDYDTVNPEENALRSLIASARSHVEISQQDLNATCPPLPRYDIRT
YDTLAGKLAAGVKVRIVVSDPANARSQIKSLDEISDTLRTRLVALTGDNE
KASRALCGNLQLASFRSSDAAKWADGKPYALHHKLVSVDDSAFYIGSKNL
YPAWLQDFGYIVESPAAAQQLKTELLDPEWKYSQQAAATPAGCP
Ligand information
Ligand IDIPD
InChIInChI=1S/C6H13O9P/c7-1-2(8)4(10)6(5(11)3(1)9)15-16(12,13)14/h1-11H,(H2,12,13,14)/p-2/t1-,2-,3+,4-,5-,6-/m1/s1
InChIKeyINAPMGSXUVUWAF-UOTPTPDRSA-L
SMILES
SoftwareSMILES
ACDLabs 12.01O=P([O-])([O-])OC1C(O)C(O)C(O)C(O)C1O
CACTVS 3.370O[C@@H]1[C@@H](O)[C@@H](O)[C@@H](O[P]([O-])([O-])=O)[C@H](O)[C@H]1O
OpenEye OEToolkits 1.7.6[C@H]1([C@H](C([C@@H]([C@@H](C1O)O)O)OP(=O)([O-])[O-])O)O
OpenEye OEToolkits 1.7.6C1(C(C(C(C(C1O)O)OP(=O)([O-])[O-])O)O)O
CACTVS 3.370O[CH]1[CH](O)[CH](O)[CH](O[P]([O-])([O-])=O)[CH](O)[CH]1O
FormulaC6 H11 O9 P
NameD-MYO-INOSITOL-1-PHOSPHATE
ChEMBL
DrugBank
ZINC
PDB chain7js7 Chain A Residue 603 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB7js7 Structures of an engineered phospholipase D with specificity for secondary alcohol transphosphatidylation: insights into plasticity of substrate binding and activation.
Resolution2.3 Å
Binding residue
(original residue number in PDB)
H168 H442
Binding residue
(residue number reindexed from 1)
H165 H432
Annotation score1
Enzymatic activity
Enzyme Commision number 3.1.4.4: phospholipase D.
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0004630 phospholipase D activity
GO:0016787 hydrolase activity
GO:0030572 phosphatidyltransferase activity
Biological Process
GO:0016042 lipid catabolic process
GO:0032049 cardiolipin biosynthetic process
Cellular Component
GO:0005576 extracellular region

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Molecular Function

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Cellular Component
External links
PDB RCSB:7js7, PDBe:7js7, PDBj:7js7
PDBsum7js7
PubMed33843991
UniProtQ53728|PLD_STRAT Phospholipase D

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