Structure of PDB 7jqq Chain A Binding Site BS01

Receptor Information
>7jqq Chain A (length=327) Species: 10756 (Salasvirus phi29) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SLFYNPQKMLSYDRILNFVIGARGIGKSYAMKVYPINRFIKYGEQFIYVR
RYKPELAKVSNYFNDVAQEFPDHELVVKGRRFYIDGKLAGWAIPLSVWQS
EKSNAYPNVSTIVFDEFIREKDNSNYIPNEVSALLNLMDTVFRNRERVRC
ICLSNAVSVVNPYFLFFNLVPDVNKRFNVYDDALIEIPDSLDFSSERRKT
RFGRLIDGTEYGEMSLDNQFIGDSQVFIEKRSKDSKFVFSIVYNGFTLGV
WVDVNQGLMYIDTAHDPSTKNVYTLTTDDLNENMMLITNYKNNYHLRKLA
SAFMNGYLRFDNQVIRNIAYELFRKMR
Ligand information
>7jqq Chain K (length=117) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ggaaugguacgguacuuccauugucauguguauguuggggauuaaacccu
gauugaguucagcccacauacuuuguugauugguugucaaucauggcaaa
agugcacgcuacuuucc
.<<..<.<<<<.<<<<<....<<<<<<<..<<<<..<<<.........<<
<<......>>>>>>>.>>>>.......<<<.....>>>...>>>>>>>.>
>>>>..>>.>>.>.>>.
Receptor-Ligand Complex Structure
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PDB7jqq A viral genome packaging motor transitions between cyclic and helical symmetry to translocate dsDNA.
Resolution4.1 Å
Binding residue
(original residue number in PDB)		Q10 L13 S14 Y15 D16 R17 Y37 D237 K239 H268 D269 P270 T272
Binding residue
(residue number reindexed from 1)		Q7 L10 S11 Y12 D13 R14 Y34 D234 K236 H265 D266 P267 T269
Enzymatic activity
Enzyme Commision number 3.6.4.-
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003723 RNA binding
GO:0005524 ATP binding
GO:0016787 hydrolase activity
GO:0016887 ATP hydrolysis activity
Biological Process
GO:0019073 viral DNA genome packaging

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Molecular Function
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Biological Process
External links
PDB RCSB:7jqq, PDBe:7jqq, PDBj:7jqq
PDBsum7jqq
PubMed33962953
UniProtP11014|PKG16_BPPH2 DNA packaging protein (Gene Name=16)

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