Structure of PDB 7jnd Chain A Binding Site BS01
Receptor Information
>7jnd Chain A (length=387) Species:
195103
(Clostridium perfringens ATCC 13124) [
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HQARVSKFDLYNSDKLDAYNQEFQVSRSNIKSINNNGGKYNSSTIDKAID
GNLETHWETGKPNDANFTNEVVVTFNEITNIDRIVYSARRDSARGKGFAK
EFEIYASLKDEGDDFNLVSSGEYTESTRDLVEIKFNPTDFKRLKFKFKKA
DQNWASAAEFMFYKEDKLNEKFNGLFTDSSMNKVSEEFNTLEKLNAFENE
LKDHPIYDLYKEGLNNARAILTETSENPTKATLGQITYNLNDDYNNQYRM
PYKNIKAIKNNGRHYAAQNIEKAIDNDVNTYWETGTLNSSSFNNEVEVEF
NDLVTLDRIVYGSRQSDLKGFAEEVYIYASRTSKGDTYKLVATGAHEATK
GLVEAKFEPTEFKRVKFKFKKSKQNSATLNELMFYKP
Ligand information
Ligand ID
CA
InChI
InChI=1S/Ca/q+2
InChIKey
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
Software
SMILES
CACTVS 3.341
[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0
[Ca+2]
Formula
Ca
Name
CALCIUM ION
ChEMBL
DrugBank
DB14577
ZINC
PDB chain
7jnd Chain A Residue 501 [
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Receptor-Ligand Complex Structure
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PDB
7jnd
Architecturally complex O -glycopeptidases are customized for mucin recognition and hydrolysis.
Resolution
2.0 Å
Binding residue
(original residue number in PDB)
K93 D96 N98 T101 A204 E205
Binding residue
(residue number reindexed from 1)
K47 D50 N52 T55 A158 E159
Annotation score
4
Enzymatic activity
Enzyme Commision number
?
External links
PDB
RCSB:7jnd
,
PDBe:7jnd
,
PDBj:7jnd
PDBsum
7jnd
PubMed
33658366
UniProt
A0A0H2YN38
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