Structure of PDB 7e2b Chain A Binding Site BS01

Receptor Information
>7e2b Chain A (length=253) Species: 186497 (Pyrococcus furiosus DSM 3638) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GNPMWERDKIIVLGHRGYMAKYPENSLLSIRKAIEAGADGVEIDVWLSKD
NKVILMHAETIDRTSNLKGRQKEMTLEELKKANIGMGERIPTLEEVFEIL
PKDALLNIEIKDRDAAKEVARIVSENNPERVMISSFDIEALREYRKYDDT
TIMGLLVDKEETVPLIPKLKEKLNLWSVNVPMEAIPIIGFEKTYQAIKWV
RSLGLKIVLWTEDDKLFYVDENLKRLLGMFEVVIANDVERMVSYLSSLGI
RLE
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain7e2b Chain A Residue 303 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB7e2b Observation of the GPC production during hydrolysis of LPC by GDPD D60A from Pyrococcus furiosus DSM 3638
Resolution1.85 Å
Binding residue
(original residue number in PDB)		E44 D46 E111
Binding residue
(residue number reindexed from 1)		E42 D44 E109
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0008081 phosphoric diester hydrolase activity
GO:0046872 metal ion binding
Biological Process
GO:0006629 lipid metabolic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:7e2b, PDBe:7e2b, PDBj:7e2b
PDBsum7e2b
PubMed
UniProtQ8TZI9

[Back to BioLiP]